Download MendeleyThe crystal structure of Pygo2-LDB1-SSBP2 triple complex
Wang, H.Y., Yan, X.X., Xu, W.Q.To be published.
8HIB
The crystal structure of Pygo2-LDB1-SSBP2 triple complex
- PDB DOI: https://doi.org/10.2210/pdb8HIB/pdb
- Classification: TRANSCRIPTION
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2022-11-19 Released: 2023-11-22
- Funding Organization(s): Chinese Academy of Sciences, National Natural Science Foundation of China (NSFC), Other government
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.45 Å
- R-Value Free: 0.246
- R-Value Work: 0.213
- R-Value Observed: 0.215
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| LIM domain-binding protein 1 | A [auth V] | 230 | Homo sapiens | Mutation(s): 0 Gene Names: LDB1, CLIM2 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q86U70 (Homo sapiens) Explore Q86U70 Go to UniProtKB: Q86U70 | |||||
PHAROS: Q86U70 GTEx: ENSG00000198728 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q86U70 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Single-stranded DNA-binding protein 2 | B [auth A], C [auth B] | 94 | Homo sapiens | Mutation(s): 0 Gene Names: SSBP2, SSDP2 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P81877 (Homo sapiens) Explore P81877 Go to UniProtKB: P81877 | |||||
PHAROS: P81877 GTEx: ENSG00000145687 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P81877 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Pygopus homolog 2 | 27 | Homo sapiens | Mutation(s): 0 Gene Names: PYGO2, PP7910 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9BRQ0 (Homo sapiens) Explore Q9BRQ0 Go to UniProtKB: Q9BRQ0 | |||||
PHAROS: Q9BRQ0 GTEx: ENSG00000163348 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9BRQ0 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.45 Å
- R-Value Free: 0.246
- R-Value Work: 0.213
- R-Value Observed: 0.215
- Space Group: P 65 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 104.499 | α = 90 |
| b = 104.499 | β = 90 |
| c = 252.274 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| PHENIX | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-11-22 Deposition Author(s): Wang, H.Y., Yan, X.X., Xu, W.Q.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Chinese Academy of Sciences | China | XDB37030302 |
| Chinese Academy of Sciences | China | 2021kf01 |
| National Natural Science Foundation of China (NSFC) | China | 32000862 |
| National Natural Science Foundation of China (NSFC) | China | 32171218 |
| Other government | BX20200351 |
Revision History (Full details and data files)
- Version 1.0: 2023-11-22
Type: Initial release
