8HF3

Cryo-EM structure of human ZDHHC9/GCP16 complex

• PDB DOI: https://doi.org/10.2210/pdb8HF3/pdb
• EM Map EMD-34711: EMDB EMDataResource

• Classification: TRANSFERASE
• Organism(s): Homo sapiens
• Expression System: Homo sapiens
• Mutation(s): No 
• Membrane Protein: Yes  PDBTMMemProtMD


• Deposited: 2022-11-09 Released: 2023-11-22 
• Deposition Author(s): Wu, J., Hu, Q., Zhang, Y., Liu, S., Yang, A.
• Funding Organization(s): Ministry of Science and Technology (MoST, China)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.40 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Cryo-EM structure of human ZDHHC9/GCP16 complex

Wu, J., Hu, Q., Zhang, Y., Liu, S., Yang, A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 60.45 kDa 
• Atom Count: 3,464 
• Modelled Residue Count: 419 
• Deposited Residue Count: 516 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Palmitoyltransferase ZDHHC9	A	372	Homo sapiens	Mutation(s): 0  Gene Names: ZDHHC9, CXorf11, ZDHHC10, ZNF379, ZNF380, CGI-89, UNQ261/PRO298 EC: 2.3.1.225 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y397 (Homo sapiens) Explore Q9Y397  Go to UniProtKB:  Q9Y397
PHAROS:  Q9Y397 GTEx:  ENSG00000188706

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Golgin subfamily A member 7	B	144	Homo sapiens	Mutation(s): 0  Gene Names: GOLGA7, GCP16, HDCKB03P, HSPC041 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for Q7Z5G4 (Homo sapiens) Explore Q7Z5G4  Go to UniProtKB:  Q7Z5G4
PHAROS:  Q7Z5G4 GTEx:  ENSG00000147533

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
PX2	I [auth A]	1,2-DILAUROYL-SN-GLYCERO-3-PHOSPHATE C27 H52 O8 P OKLASJZQBDJAPH-RUZDIDTESA-M
PLM (Subject of Investigation/LOI)	E [auth A], F [auth A], G [auth A], H [auth A]	PALMITIC ACID C16 H32 O2 IPCSVZSSVZVIGE-UHFFFAOYSA-N
ZN	C [auth A], D [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.40 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-11-22 
Deposition Author(s): Wu, J., Hu, Q., Zhang, Y., Liu, S., Yang, A.

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Funding Organization	Location	Grant Number
Ministry of Science and Technology (MoST, China)	China	--

Revision History  

• Version 1.0: 2023-11-22
  Type: Initial release