8HEY

One CVSC-binding penton vertex in HCMV B-capsid

  • Classification: VIRAL PROTEIN
  • Organism(s): Human betaherpesvirus 5
  • Mutation(s): No 

  • Deposited: 2022-11-09 Released: 2023-11-01 
  • Deposition Author(s): Li, Z., Yu, X.
  • Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Cryo-electron microscopy structures of capsids and in situ portals of DNA-devoid capsids of human cytomegalovirus.

Li, Z.Pang, J.Gao, R.Wang, Q.Zhang, M.Yu, X.

(2023) Nat Commun 14: 2025-2025

  • DOI: https://doi.org/10.1038/s41467-023-37779-0
  • Primary Citation of Related Structures:  
    8HEU, 8HEV, 8HEX, 8HEY

  • PubMed Abstract: 

    The portal-scaffold complex is believed to nucleate the assembly of herpesvirus procapsids. During capsid maturation, two events occur: scaffold expulsion and DNA incorporation. The portal-scaffold interaction and the conformational changes that occur to the portal during the different stages of capsid formation have yet to be elucidated structurally. Here we present high-resolution structures of the A- and B-capsids and in-situ portals of human cytomegalovirus. We show that scaffolds bind to the hydrophobic cavities formed by the dimerization and Johnson-fold domains of the major capsid proteins. We further show that 12 loop-helix-loop fragments-presumably from the scaffold domain-insert into the hydrophobic pocket of the portal crown domain. The portal also undergoes significant changes both positionally and conformationally as it accompanies DNA packaging. These findings unravel the mechanism by which the portal interacts with the scaffold to nucleate capsid assembly and further our understanding of scaffold expulsion and DNA incorporation.


  • Organizational Affiliation

    School of Pharmaceutical Science and Technology, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, Hangzhou, 310024, China.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Small capsomere-interacting protein75Human betaherpesvirus 5Mutation(s): 0 
UniProt
Find proteins for A8T7C4 (Human cytomegalovirus)
Explore A8T7C4 
Go to UniProtKB:  A8T7C4
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UniProt GroupA8T7C4
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Major capsid protein1,370Human betaherpesvirus 5Mutation(s): 0 
UniProt
Find proteins for A0A1U8QPG3 (Human cytomegalovirus)
Explore A0A1U8QPG3 
Go to UniProtKB:  A0A1U8QPG3
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UniProt GroupA0A1U8QPG3
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Triplex capsid protein 2H [auth h],
I,
J [auth n],
K [auth o]
306Human betaherpesvirus 5Mutation(s): 0 
UniProt
Find proteins for Q6RXF2 (Human cytomegalovirus)
Explore Q6RXF2 
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UniProt GroupQ6RXF2
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Triplex capsid protein 1L [auth g],
M [auth m]
290Human betaherpesvirus 5Mutation(s): 0 
UniProt
Find proteins for Q6RXH2 (Human cytomegalovirus)
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UniProt GroupQ6RXH2
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  • Reference Sequence
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Capsid vertex component 1T [auth M]594Human betaherpesvirus 5Mutation(s): 0 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Capsid vertex component 2U [auth N],
V [auth O]
642Human betaherpesvirus 5Mutation(s): 0 
UniProt
Find proteins for A0A3G6XKK5 (Human cytomegalovirus)
Explore A0A3G6XKK5 
Go to UniProtKB:  A0A3G6XKK5
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UniProt GroupA0A3G6XKK5
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data

  • Released Date: 2023-11-01 
  • Deposition Author(s): Li, Z., Yu, X.

Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China31900869

Revision History  (Full details and data files)

  • Version 1.0: 2023-11-01
    Type: Initial release