8HEA | pdb_00008hea

Esterase2 (EaEst2) from Exiguobacterium antarcticum


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.74 Å
  • R-Value Free: 
    0.213 (Depositor), 0.212 (DCC) 
  • R-Value Work: 
    0.196 (Depositor), 0.196 (DCC) 
  • R-Value Observed: 
    0.197 (Depositor) 

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 8HEA

This is version 1.1 of the entry. See complete history

Literature

Structural and Biochemical Insights into Bis(2-hydroxyethyl) Terephthalate Degrading Carboxylesterase Isolated from Psychrotrophic Bacterium Exiguobacterium antarcticum.

Hwang, J.Yoo, W.Shin, S.C.Kim, K.K.Kim, H.W.Do, H.Lee, J.H.

(2023) Int J Mol Sci 24

  • DOI: https://doi.org/10.3390/ijms241512022
  • Primary Citation Related Structures: 
    8HEA

  • PubMed Abstract: 

    This study aimed to elucidate the crystal structure and biochemically characterize the carboxylesterase Ea Est2, a thermotolerant biocatalyst derived from Exiguobacterium antarcticum , a psychrotrophic bacterium. Sequence and phylogenetic analyses showed that Ea Est2 belongs to the Family XIII group of carboxylesterases. Ea Est2 has a broad range of substrate specificities for short-chain p -nitrophenyl ( p NP) esters, 1-naphthyl acetate (1-NA), and 1-naphthyl butyrate (1-NB). Its optimal pH is 7.0, losing its enzymatic activity at temperatures above 50 °C. Ea Est2 showed degradation activity toward bis(2-hydroxyethyl) terephthalate (BHET), a polyethylene terephthalate degradation intermediate. We determined the crystal structure of Ea Est2 at a 1.74 Å resolution in the ligand-free form to investigate BHET degradation at a molecular level. Finally, the biochemical stability and immobilization of a crosslinked enzyme aggregate (CLEA) were assessed to examine its potential for industrial application. Overall, the structural and biochemical characterization of Ea Est2 demonstrates its industrial potency as a biocatalyst.


  • Organizational Affiliation
    • Research Unit of Cryogenic Novel Material, Korea Polar Research Institute, Incheon 21990, Republic of Korea.

Macromolecule Content 

  • Total Structure Weight: 27.73 kDa 
  • Atom Count: 2,099 
  • Modeled Residue Count: 244 
  • Deposited Residue Count: 246 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Thermostable carboxylesterase Est30246Exiguobacterium antarcticum B7Mutation(s): 0 
Gene Names: Eab7_2224

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.74 Å
  • R-Value Free:  0.213 (Depositor), 0.212 (DCC) 
  • R-Value Work:  0.196 (Depositor), 0.196 (DCC) 
  • R-Value Observed: 0.197 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 50.362α = 90
b = 67.789β = 90
c = 89.617γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Research Foundation (NRF, Korea)Korea, Republic OfPM22030

Revision History  (Full details and data files)

  • Version 1.0: 2023-09-20
    Type: Initial release
  • Version 1.1: 2026-03-04
    Changes: Refinement description, Structure summary