8H8C

Type VI secretion system effector RhsP in its post-autoproteolysis and dimeric form


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.36 Å
  • Aggregation State: 3D ARRAY 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Vibrio parahaemolyticus prey targeting requires autoproteolysis-triggered dimerization of the type VI secretion system effector RhsP.

Tang, L.Dong, S.Rasheed, N.Wu, H.W.Zhou, N.Li, H.Wang, M.Zheng, J.He, J.Chao, W.C.H.

(2022) Cell Rep 41: 111732-111732

  • DOI: https://doi.org/10.1016/j.celrep.2022.111732
  • Primary Citation of Related Structures:  
    8H8A, 8H8B, 8H8C

  • PubMed Abstract: 

    The rearrangement hotspot (Rhs) repeat is an ancient giant protein fold found in all domains of life. Rhs proteins are polymorphic toxins that could either be deployed as an ABC complex or via a type VI secretion system (T6SS) in interbacterial competitions. To explore the mechanism of T6SS-delivered Rhs toxins, we used the gastroenteritis-associated Vibrio parahaemolyticus as a model organism and identified an Rhs toxin-immunity pair, RhsP-RhsP I . Our data show that RhsP-dependent prey targeting by V. parahaemolyticus requires T6SS2. RhsP can bind to VgrG2 independently without a chaperone and spontaneously self-cleaves into three fragments. The toxic C-terminal fragment (RhsP C ) can bind to VgrG2 via a VgrG2-interacting region (VIR). Our electron microscopy (EM) analysis reveals that the VIR is encapsulated inside the Rhs β barrel structure and that autoproteolysis triggers a dramatic conformational change of the VIR. This alternative VIR conformation promotes RhsP dimerization, which significantly contributes to T6SS2-mediated prey targeting by V. parahaemolyticus.


  • Organizational Affiliation

    Faculty of Health Sciences, University of Macau, Macau SAR, China; Guangdong Provincial Key Laboratory of Infectious Diseases and Molecular Immunopathology, Shantou University Medical College, Shantou 515041, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Putative Rhs-family proteinA [auth B],
C [auth A]
1,152Vibrio parahaemolyticus RIMD 2210633Mutation(s): 0 
Gene Names: VP1517
UniProt
Find proteins for Q87PI5 (Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633))
Explore Q87PI5 
Go to UniProtKB:  Q87PI5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ87PI5
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
C-terminal peptide from Putative Rhs-family proteinB [auth C],
D
250Vibrio parahaemolyticus RIMD 2210633Mutation(s): 1 
Gene Names: VP1517
UniProt
Find proteins for Q87PI5 (Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633))
Explore Q87PI5 
Go to UniProtKB:  Q87PI5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ87PI5
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.36 Å
  • Aggregation State: 3D ARRAY 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)ChinaNSFC U20A2013
National Natural Science Foundation of China (NSFC)China32170189

Revision History  (Full details and data files)

  • Version 1.0: 2023-01-18
    Type: Initial release