Download MendeleyCrystal structure of Rv3400 from Mycobacterium tuberculosis
Singh, L., Karthikeyan, S., Thakur, K.G.To be published.
8H5S
Crystal structure of Rv3400 from Mycobacterium tuberculosis
- PDB DOI: https://doi.org/10.2210/pdb8H5S/pdb
- Classification: ISOMERASE
- Organism(s): Mycobacterium tuberculosis H37Rv
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2022-10-13 Released: 2023-10-25
- Funding Organization(s): Council of Scientific & Industrial Research (CSIR)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.173
- R-Value Work: 0.154
- R-Value Observed: 0.155
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Beta-phosphoglucomutase | 260 | Mycobacterium tuberculosis H37Rv | Mutation(s): 4 Gene Names: Rv3400, MTCY78.28c |  | |
UniProt | |||||
Find proteins for P9WKZ7 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)) Explore P9WKZ7 Go to UniProtKB: P9WKZ7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P9WKZ7 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | B [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| EDO Query on EDO | C [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| CL Query on CL | D [auth A], E [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.173
- R-Value Work: 0.154
- R-Value Observed: 0.155
- Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 97.903 | α = 90 |
| b = 106.389 | β = 90 |
| c = 81.204 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| PHENIX | refinement |
| XDS | data reduction |
| XDS | data scaling |
| PHENIX | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-10-25 Deposition Author(s): Singh, L., Karthikeyan, S., Thakur, K.G.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Council of Scientific & Industrial Research (CSIR) | India | MLP0018 |
Revision History (Full details and data files)
- Version 1.0: 2023-10-25
Type: Initial release - Version 1.1: 2023-11-15
Changes: Data collection
