Download MendeleyA case of balance engineering exhibits kinetic relationship between mesophilic and thermophilic poly(ethylene terephthalate) depolymerases.
Lee, S.H., Seo, H., Kim, K.J.To be published.
8H5J
Crystal structure of PETase S121E/A180V/P181V/D186H/N233C/S242T/N246D/S282C mutant from Ideonella sakaiensis
- PDB DOI: https://doi.org/10.2210/pdb8H5J/pdb
- Classification: HYDROLASE
- Organism(s): Piscinibacter sakaiensis
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2022-10-13 Released: 2023-10-25
- Funding Organization(s): Other government
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.40 Å
- R-Value Free: 0.190
- R-Value Work: 0.157
- R-Value Observed: 0.158
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Poly(ethylene terephthalate) hydrolase | 300 | Piscinibacter sakaiensis | Mutation(s): 8 Gene Names: ISF6_4831 EC: 3.1.1.101 |  | |
UniProt | |||||
Find proteins for A0A0K8P6T7 (Ideonella sakaiensis (strain NBRC 110686 / TISTR 2288 / 201-F6)) Explore A0A0K8P6T7 Go to UniProtKB: A0A0K8P6T7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0K8P6T7 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PO4 Query on PO4 | D [auth A], E [auth A], G [auth B] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| GOL Query on GOL | H [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| K Query on K | C [auth A], F [auth B], I [auth B] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.40 Å
- R-Value Free: 0.190
- R-Value Work: 0.157
- R-Value Observed: 0.158
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 139.218 | α = 90 |
| b = 50.665 | β = 124.64 |
| c = 80.854 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data reduction |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data scaling |
| MOLREP | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-10-25 Deposition Author(s): Lee, S.H., Seo, H., Kim, K.-J.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Other government | -- |
Revision History (Full details and data files)
- Version 1.0: 2023-10-25
Type: Initial release
