Crystal structure of PlyGRCS, a bacteriophage Endolysin in complex with Cold shock protein C
Padmanabhan, B., Gopinatha, K., Mandal, M., Saranya, G., Sudhagar, B.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Endolysin | 250 | Staphylococcus phage GRCS | Mutation(s): 0  Gene Names: GRCS_0015 | ||
UniProt | |||||
Find proteins for W6EBY7 (Staphylococcus phage GRCS) Explore W6EBY7  Go to UniProtKB:  W6EBY7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | W6EBY7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cold shock-like protein CspC | 69 | Escherichia coli K-12 | Mutation(s): 0  Gene Names: cspC, msmB, b1823, JW1812 | ||
UniProt | |||||
Find proteins for P0A9Y6 (Escherichia coli (strain K12)) Explore P0A9Y6  Go to UniProtKB:  P0A9Y6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A9Y6 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MES Query on MES | D [auth A] | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID C6 H13 N O4 S SXGZJKUKBWWHRA-UHFFFAOYSA-N | |||
CA Query on CA | C [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 50.667 | α = 90 |
b = 55.29 | β = 90 |
c = 99.308 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
MOSFLM | data reduction |
Aimless | data scaling |
PHENIX | phasing |
Funding Organization | Location | Grant Number |
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Science and Engineering Research Board (SERB) | India | CRG/2019/002603 |