8GY2

Deposited: 2022-09-21 Released: 2023-08-02
Deposition Author(s): Adachi, T., Miyata, T., Makino, F., Tanaka, H., Namba, K., Sowa, K., Kitazumi, Y., Shirai, O.
Funding Organization(s): Japan Agency for Medical Research and Development (AMED), Japan Society for the Promotion of Science (JSPS)

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

(2023) ACS Catal 13: 7955-7965

Macromolecule Content

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Alcohol dehydrogenase (quinone), dehydrogenase subunit	A	757	Gluconobacter oxydans 621H	Mutation(s): 0 Gene Names: adhA, GOX1068 EC: 1.1.5.5
UniProt
Find proteins for O05542 (Gluconobacter oxydans (strain 621H)) Explore O05542 Go to UniProtKB: O05542
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	O05542
Sequence Annotations Expand
Reference Sequence

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(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Alcohol dehydrogenase (quinone), cytochrome c subunit	B	478	Gluconobacter oxydans 621H	Mutation(s): 0 Gene Names: adhB, GOX1067 EC: 1.1.5.5
UniProt
Find proteins for Q47945 (Gluconobacter oxydans (strain 621H)) Explore Q47945 Go to UniProtKB: Q47945
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q47945
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Small subunit of alcohol dehydrogenase	C	133	Gluconobacter oxydans	Mutation(s): 0 EC: 1.1.5.5
UniProt
Find proteins for O05544 (Gluconobacter oxydans (strain 621H)) Explore O05544 Go to UniProtKB: O05544
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	O05544
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
U10 Query on U10 Download Ideal Coordinates CCD File SDF format, chain J [auth B] MOL2 format, chain J [auth B]	J [auth B]	UBIQUINONE-10 C₅₉ H₉₀ O₄ ACTIUHUUMQJHFO-UPTCCGCDSA-N		Interactions Focus chain J [auth B] Interactions & Density Focus chain J [auth B]
HEC Query on HEC Download Ideal Coordinates CCD File SDF format, chain D [auth A] SDF format, chain G [auth B] SDF format, chain H [auth B] SDF format, chain I [auth B] MOL2 format, chain D [auth A] MOL2 format, chain G [auth B] MOL2 format, chain H [auth B] MOL2 format, chain I [auth B]	D [auth A], G [auth B], H [auth B], I [auth B]	HEME C C₃₄ H₃₄ Fe N₄ O₄ HXQIYSLZKNYNMH-LJNAALQVSA-N		Interactions Focus chain D [auth A] Focus chain G [auth B] Focus chain H [auth B] Focus chain I [auth B] Interactions & Density Focus chain D [auth A] Focus chain G [auth B] Focus chain H [auth B] Focus chain I [auth B]
PQQ Query on PQQ Download Ideal Coordinates CCD File SDF format, chain E [auth A] MOL2 format, chain E [auth A]	E [auth A]	PYRROLOQUINOLINE QUINONE C₁₄ H₆ N₂ O₈ MMXZSJMASHPLLR-UHFFFAOYSA-N		Interactions Focus chain E [auth A] Interactions & Density Focus chain E [auth A]
CA Query on CA Download Ideal Coordinates CCD File SDF format, chain F [auth A] MOL2 format, chain F [auth A]	F [auth A]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Interactions Focus chain F [auth A] Interactions & Density Focus chain F [auth A]