8GRR

Complex of FMDV A/WH/CHA/09 and bovine neutralizing scFv antibody W125


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.72 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Conserved antigen structures and antibody-driven variations on foot-and-mouth disease virus serotype A revealed by bovine neutralizing monoclonal antibodies.

Li, K.He, Y.Wang, L.Li, P.Bao, H.Huang, S.Zhou, S.Zhu, G.Song, Y.Li, Y.Wang, S.Zhang, Q.Sun, P.Bai, X.Zhao, Z.Lou, Z.Cao, Y.Lu, Z.Liu, Z.

(2023) PLoS Pathog 19: e1011811-e1011811

  • DOI: https://doi.org/10.1371/journal.ppat.1011811
  • Primary Citation of Related Structures:  
    8GRR, 8GSP

  • PubMed Abstract: 

    Foot-and-mouth disease virus (FMDV) serotype A is antigenically most variable within serotypes. The structures of conserved and variable antigenic sites were not well resolved. Here, a historical A/AF72 strain from A22 lineage and a latest A/GDMM/2013 strain from G2 genotype of Sea97 lineage were respectively used as bait antigen to screen single B cell antibodies from bovine sequentially vaccinated with A/WH/CHA/09 (G1 genotype of Sea97 lineage), A/GDMM/2013 and A/AF72 antigens. Total of 39 strain-specific and 5 broad neutralizing antibodies (bnAbs) were isolated and characterized. Two conserved antigenic sites were revealed by the Cryo-EM structures of FMDV serotype A with two bnAbs W2 and W125. The contact sites with both VH and VL of W125 were closely around icosahedral threefold axis and covered the B-C, E-F, and H-I loops on VP2 and the B-B knob and H-I loop on VP3; while contact sites with only VH of W2 concentrated on B-B knob, B-C and E-F loops on VP3 scattering around the three-fold axis of viral particle. Additional highly conserved epitopes also involved key residues of VP158, VP1147 and both VP272 / VP1147 as determined respectively by bnAb W153, W145 and W151-resistant mutants. Furthermore, the epitopes recognized by 20 strain-specific neutralization antibodies involved the key residues located on VP3 68 for A/AF72 (11/20) and VP3 175 position for A/GDMM/2013 (9/19), respectively, which revealed antigenic variation between different strains of serotype A. Analysis of antibody-driven variations on capsid of two virus strains showed a relatively stable VP2 and more variable VP3 and VP1. This study provided important information on conserve and variable antigen structures to design broad-spectrum molecular vaccine against FMDV serotype A.


  • Organizational Affiliation

    State Key Laboratory for Animal Disease Control and Prevention, College of Veterinary Medicine, Lanzhou University, National Foot-and-Mouth Diseases Reference Laboratory, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou (P.R. China).


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
A/WH/CHA/09 VP1A [auth 1]212Foot-and-mouth disease virus AMutation(s): 0 
UniProt
Find proteins for E7D6A4 (Foot-and-mouth disease virus A)
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Go to UniProtKB:  E7D6A4
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UniProt GroupE7D6A4
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
A/WH/CHA/09 VP2B [auth 2]218Foot-and-mouth disease virus AMutation(s): 0 
UniProt
Find proteins for D0E7R9 (Foot-and-mouth disease virus A)
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UniProt GroupD0E7R9
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
A/WH/CHA/09 VP3C [auth 3]221Foot-and-mouth disease virus AMutation(s): 0 
UniProt
Find proteins for D0E7S2 (Foot-and-mouth disease virus A)
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UniProt GroupD0E7S2
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
A/WH/CHA/09 VP4D [auth 4]85Foot-and-mouth disease virus AMutation(s): 0 
UniProt
Find proteins for E6Y5R3 (Foot-and-mouth disease virus A)
Explore E6Y5R3 
Go to UniProtKB:  E6Y5R3
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UniProt GroupE6Y5R3
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
IG HEAVY CHAIN VARIABLE REGIONE [auth H]135Bos taurusMutation(s): 0 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
IG LAMDA CHAIN VARIABLE REGIONF [auth L]123Bos taurusMutation(s): 0 
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.72 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data

  • Released Date: 2023-10-11 
  • Deposition Author(s): He, Y., Kun, L.

Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2023-10-11
    Type: Initial release
  • Version 1.1: 2023-12-06
    Changes: Database references