8GK8

R21A Staphylococcus aureus pyruvate carboxylase

PDB DOI: https://doi.org/10.2210/pdb8GK8/pdb

Classification: LIGASE
Organism(s): Staphylococcus aureus
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2023-03-17 Released: 2023-08-30
Deposition Author(s): Laseke, A.J., St.Maurice, M.
Funding Organization(s): National Institutes of Health/Eunice Kennedy Shriver National Institute of Child Health & Human Development (NIH/NICHD)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.68 Å
R-Value Free: 0.301
R-Value Work: 0.248
R-Value Observed: 0.251

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

R21A Staphylococcus aureus pyruvate carboxylase

Laseke, A.J., St.Maurice, M.

To be published.

Macromolecule Content

Total Structure Weight: 517.6 kDa
Atom Count: 31,053
Modelled Residue Count: 4,037
Deposited Residue Count: 4,604
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Pyruvate carboxylase	A [auth C], B, C [auth D], D [auth A]	1,151	Staphylococcus aureus	Mutation(s): 1 Gene Names: G6Y24_05790 EC: 6.4.1.1
UniProt
Find proteins for A0A3A5LTU8 (Staphylococcus aureus) Explore A0A3A5LTU8 Go to UniProtKB: A0A3A5LTU8
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A3A5LTU8
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ACO (Subject of Investigation/LOI) Query on ACO Download Ideal Coordinates CCD File SDF format, chain M [auth A] MOL2 format, chain M [auth A]	M [auth A]	*ACETYL COENZYME A** C₂₃ H₃₈ N₇ O₁₇ P₃ S ZSLZBFCDCINBPY-ZSJPKINUSA-N		Interactions Focus chain M [auth A] Interactions & Density Focus chain M [auth A]
COA Query on COA Download Ideal Coordinates CCD File SDF format, chain F [auth C] MOL2 format, chain F [auth C]	F [auth C]	COENZYME A C₂₁ H₃₆ N₇ O₁₆ P₃ S RGJOEKWQDUBAIZ-IBOSZNHHSA-N		Interactions Focus chain F [auth C] Interactions & Density Focus chain F [auth C]
BTI Query on BTI Download Ideal Coordinates CCD File SDF format, chain E [auth C] SDF format, chain H [auth C] SDF format, chain I [auth B] SDF format, chain L [auth A] MOL2 format, chain E [auth C] MOL2 format, chain H [auth C] MOL2 format, chain I [auth B] MOL2 format, chain L [auth A]	E [auth C], H [auth C], I [auth B], L [auth A]	5-(HEXAHYDRO-2-OXO-1H-THIENO[3,4-D]IMIDAZOL-6-YL)PENTANAL C₁₀ H₁₆ N₂ O₂ S ARDNWGMSCXSPBF-CIUDSAMLSA-N		Interactions Focus chain E [auth C] Focus chain H [auth C] Focus chain I [auth B] Focus chain L [auth A] Interactions & Density Focus chain E [auth C] Focus chain H [auth C] Focus chain I [auth B] Focus chain L [auth A]
MN Query on MN Download Ideal Coordinates CCD File SDF format, chain G [auth C] SDF format, chain J [auth B] SDF format, chain K [auth D] SDF format, chain N [auth A] MOL2 format, chain G [auth C] MOL2 format, chain J [auth B] MOL2 format, chain K [auth D] MOL2 format, chain N [auth A]	G [auth C], J [auth B], K [auth D], N [auth A]	MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N		Interactions Focus chain G [auth C] Focus chain J [auth B] Focus chain K [auth D] Focus chain N [auth A] Interactions & Density Focus chain G [auth C] Focus chain J [auth B] Focus chain K [auth D] Focus chain N [auth A]