8GAN

Exploiting Activation and Inactivation Mechanisms in Type I-C CRISPR-Cas3 for Genome Editing Applications


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.26 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


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Literature

Exploiting activation and inactivation mechanisms in type I-C CRISPR-Cas3 for genome-editing applications.

Hu, C.Myers, M.T.Zhou, X.Hou, Z.Lozen, M.L.Nam, K.H.Zhang, Y.Ke, A.

(2024) Mol Cell 84: 463-475.e5

  • DOI: https://doi.org/10.1016/j.molcel.2023.12.034
  • Primary Citation of Related Structures:  
    8G9S, 8G9T, 8G9U, 8GAF, 8GAM, 8GAN

  • PubMed Abstract: 

    Type I CRISPR-Cas systems utilize the RNA-guided Cascade complex to identify matching DNA targets and the nuclease-helicase Cas3 to degrade them. Among the seven subtypes, type I-C is compact in size and highly active in creating large-sized genome deletions in human cells. Here, we use four cryoelectron microscopy snapshots to define its RNA-guided DNA binding and cleavage mechanisms in high resolution. The non-target DNA strand (NTS) is accommodated by I-C Cascade in a continuous binding groove along the juxtaposed Cas11 subunits. Binding of Cas3 further traps a flexible bulge in NTS, enabling NTS nicking. We identified two anti-CRISPR proteins AcrIC8 and AcrIC9 that strongly inhibit Neisseria lactamica I-C function. Structural analysis showed that AcrIC8 inhibits PAM recognition through allosteric inhibition, whereas AcrIC9 achieves so through direct competition. Both Acrs potently inhibit I-C-mediated genome editing and transcriptional modulation in human cells, providing the first off-switches for type I CRISPR eukaryotic genome engineering.


  • Organizational Affiliation

    Department of Molecular Biology and Genetics, Cornell University, 253 Biotechnology Building, Ithaca, NY 14853, USA; Department of Biological Sciences, Faculty of Science; Department of Biochemistry, Precision Medicine Translational Research Programme (TRP), Yong Loo Lin School of Medicine, National University of Singapore, Singapore 117597, Singapore.


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cas7
A, B, C, D, E
A, B, C, D, E, F, M
283Neisseria lactamicaMutation(s): 0 
Gene Names: NCTC10618_01084
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Cas11
G, I, J
124Neisseria lactamicaMutation(s): 0 
Gene Names: NCTC10618_01085
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Cas8582Neisseria lactamicaMutation(s): 0 
Gene Names: NCTC10618_01085
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Cas5205Neisseria lactamicaMutation(s): 0 
Gene Names: cas5d
UniProt
Find proteins for D0W8X4 (Neisseria lactamica ATCC 23970)
Explore D0W8X4 
Go to UniProtKB:  D0W8X4
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UniProt GroupD0W8X4
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Entity ID: 4
MoleculeChains LengthOrganismImage
crRNA (43-MER)43Neisseria lactamica
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Entity ID: 5
MoleculeChains LengthOrganismImage
Target strand DNA (53-MER)53Neisseria lactamica
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Entity ID: 7
MoleculeChains LengthOrganismImage
Proximal Non target strand DNA (5'-D(P*AP*TP*GP*AP*AP*CP*TP*TP*CP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')19Neisseria lactamica
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Entity ID: 8
MoleculeChains LengthOrganismImage
Distal Non target strand DNA (5'-D(P*AP*TP*TP*AP*TP*AP*TP*TP*AP*AP*TP*AP*TP*TP*AP*TP*AP*TP*TP*TP*A)-3')P [auth Q]21Neisseria lactamica
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.26 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Center for Research Resources (NIH/NCRR)United StatesGM118174

Revision History  (Full details and data files)

  • Version 1.0: 2024-03-06
    Type: Initial release