Download MendeleyCryo-EM structure of Riplet:RIG-I:dsRNA complex (end-inter)
Wang, W., Pyle, A.M.To be published.
8G7V
Cryo-EM structure of RNP inter
- PDB DOI: https://doi.org/10.2210/pdb8G7V/pdb
- EM Map EMD-29825: EMDB EMDataResource
- NAKB: 8G7V
- Classification: Transferase/Hydrolase/RNA
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2023-02-17 Released: 2023-11-15
- Funding Organization(s): Howard Hughes Medical Institute (HHMI), National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 3.90 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Antiviral innate immune response receptor RIG-I | 925 | Homo sapiens | Mutation(s): 0 Gene Names: DDX58 EC: 3.6.4.13 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O95786 (Homo sapiens) Explore O95786 Go to UniProtKB: O95786 | |||||
PHAROS: O95786 GTEx: ENSG00000107201 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O95786 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| E3 ubiquitin-protein ligase RNF135 | 432 | Homo sapiens | Mutation(s): 0 Gene Names: RNF135, L13 EC: 2.3.2.27 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q8IUD6 (Homo sapiens) Explore Q8IUD6 Go to UniProtKB: Q8IUD6 | |||||
PHAROS: Q8IUD6 GTEx: ENSG00000181481 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8IUD6 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| p3dsRNA24a | E [auth X] | 24 | Homo sapiens |  | |
Sequence AnnotationsExpand | |||||
| |||||
Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 4 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| p3dsRNA24b | F [auth Y] | 24 | Homo sapiens |  | |
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | G [auth A], H [auth C] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 3.90 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
Entry History & Funding Information
Deposition Data
- Released Date: 2023-11-15 Deposition Author(s): Wang, W., Pyle, A.M.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Howard Hughes Medical Institute (HHMI) | United States | -- |
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | R01AI131518 |
Revision History (Full details and data files)
- Version 1.0: 2023-11-15
Type: Initial release - Version 1.1: 2024-03-13
Changes: Source and taxonomy
