Structure of ternary complex with molecular glue targeting CK1A for degradation by the CRL4CRBN ubiquitin ligase
Miller, D.J., Young, S.M., Fischer, M.To be published.
Experimental Data Snapshot
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA damage-binding protein 1 | 860 | Homo sapiens | Mutation(s): 0  Gene Names: DDB1, XAP1 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q16531 (Homo sapiens) Explore Q16531  Go to UniProtKB:  Q16531 | |||||
PHAROS:  Q16531 GTEx:  ENSG00000167986  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q16531 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Protein cereblon | 426 | Homo sapiens | Mutation(s): 0  Gene Names: CRBN, AD-006 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q96SW2 (Homo sapiens) Explore Q96SW2  Go to UniProtKB:  Q96SW2 | |||||
PHAROS:  Q96SW2 GTEx:  ENSG00000113851  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q96SW2 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Casein kinase I isoform alpha | 341 | Homo sapiens | Mutation(s): 0  Gene Names: CSNK1A1 EC: 2.7.11.1 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P48729 (Homo sapiens) Explore P48729  Go to UniProtKB:  P48729 | |||||
PHAROS:  P48729 GTEx:  ENSG00000113712  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P48729 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
YOT (Subject of Investigation/LOI) Query on YOT | H [auth B] | (3S)-3-{5-[(1,2-benzoxazol-3-yl)amino]-1-oxo-1,3-dihydro-2H-isoindol-2-yl}piperidine-2,6-dione C20 H16 N4 O4 AJUZTJBGJWQZFW-HNNXBMFYSA-N | |||
ZN Query on ZN | G [auth B], I [auth E] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 86.66 | α = 105.49 |
b = 109.71 | β = 94.41 |
c = 112.34 | γ = 100.03 |
Software Name | Purpose |
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PHENIX | refinement |
XDS | data reduction |
XDS | data scaling |
XSCALE | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
Alexs Lemonade Stand Foundation for Cancer | United States | -- |