8G04

Structure of signaling thrombopoietin-MPL receptor complex

  • Classification: CYTOKINE
  • Organism(s): Homo sapiens
  • Expression System: Homo sapiens
  • Mutation(s): No 

  • Deposited: 2023-01-31 Released: 2023-08-30 
  • Deposition Author(s): Tsutsumi, N., Jude, K.M., Gati, C., Garcia, K.C.
  • Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID), Howard Hughes Medical Institute (HHMI), Ludwig Institute for Cancer Research (LICR)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

Structure of the thrombopoietin-MPL receptor complex is a blueprint for biasing hematopoiesis

Tsutsumi, N., Masoumi, Z., James, S.C., Tucker, J.A., Winkelmann, H., Grey, W., Picton, L.K., Moss, L., Wilson, S.C., Caveney, N.A., Jude, K.M., Gati, C., Piehler, J., Hitchcock, I.S., Garcia, K.C.

(2023) Cell 186: 1-15


Macromolecules
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Thrombopoietin171Homo sapiensMutation(s): 0 
Gene Names: THPO, MGDF
UniProt & NIH Common Fund Data Resources
Find proteins for P40225 (Homo sapiens)
Explore P40225 
Go to UniProtKB:  P40225
PHAROS:  P40225
GTEx:  ENSG00000090534 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP40225
Sequence Annotations
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  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Thrombopoietin receptor
B, C
636Homo sapiensMutation(s): 0 
Gene Names: MPL, TPOR
UniProt & NIH Common Fund Data Resources
Find proteins for P40238 (Homo sapiens)
Explore P40238 
Go to UniProtKB:  P40238
PHAROS:  P40238
GTEx:  ENSG00000117400 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP40238
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
NAG
Query on NAG
Download Ideal Coordinates CCD File 
D [auth B]
E [auth B]
F [auth B]
J [auth C]
K [auth C]
D [auth B],
E [auth B],
F [auth B],
J [auth C],
K [auth C],
L [auth C]
2-acetamido-2-deoxy-beta-D-glucopyranose
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
MAN
Query on MAN
Download Ideal Coordinates CCD File 
G [auth B]
H [auth B]
I [auth B]
M [auth C]
N [auth C]
G [auth B],
H [auth B],
I [auth B],
M [auth C],
N [auth C],
O [auth C]
alpha-D-mannopyranose
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
PCA
Query on PCA
B, C
L-PEPTIDE LINKINGC5 H7 N O3GLN
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesR37AI051321
Howard Hughes Medical Institute (HHMI)United States--
Ludwig Institute for Cancer Research (LICR)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2023-08-30
    Type: Initial release