8FW3 | pdb_00008fw3

MtrR from Neisseria gonorrhoeae bound to Testosterone

PDB DOI: https://doi.org/10.2210/pdb8FW3/pdb

Classification: TRANSCRIPTION
Organism(s): Neisseria gonorrhoeae
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-01-20 Released: 2024-01-24
Deposition Author(s): Hooks, G.H., Brennan, R.G.
Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.22 Å
R-Value Free:
0.261 (Depositor), 0.262 (DCC)
R-Value Work:
0.208 (Depositor), 0.213 (DCC)
R-Value Observed:
0.210 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.2 of the entry. See complete history.

Literature

Hormonal steroids induce multidrug resistance and stress response genes in Neisseria gonorrhoeae by binding to MtrR.

Hooks, G.M., Ayala, J.C., Holley, C.L., Dhulipala, V., Beggs, G.A., Perfect, J.R., Schumacher, M.A., Shafer, W.M., Brennan, R.G.

(2024) Nat Commun 15: 1153-1153

PubMed: 38326294 Search on PubMed Search on PubMed Central
DOI: https://doi.org/10.1038/s41467-024-45195-1
Primary Citation Related Structures:
8FW0, 8FW3, 8FW8, 8SSH

PubMed Abstract:
Transcriptional regulator MtrR inhibits the expression of the multidrug efflux pump operon mtrCDE in the pathogenic bacterium Neisseria gonorrhoeae. Here, we show that MtrR binds the hormonal steroids progesterone, β-estradiol, and testosterone, which are present at urogenital infection sites, as well as ethinyl estrogen, a component of some hormonal contraceptives. Steroid binding leads to the decreased affinity of MtrR for cognate DNA, increased mtrCDE expression, and enhanced antimicrobial resistance. Furthermore, we solve crystal structures of MtrR bound to each steroid, thus revealing their binding mechanisms and the conformational changes that induce MtrR.

Organizational Affiliation

Department of Biochemistry, Duke University School of Medicine, Durham, NC, USA.

Macromolecule Content

Total Structure Weight: 100.39 kDa
Atom Count: 6,155
Modeled Residue Count: 773
Deposited Residue Count: 852
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
HTH-type transcriptional regulator MtrR	A [auth C], B [auth D], C [auth A], D [auth B]	213	Neisseria gonorrhoeae	Mutation(s): 0 Gene Names: mtrR
UniProt
Find proteins for P39897 (Neisseria gonorrhoeae) Explore P39897 Go to UniProtKB: P39897
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P39897
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
TES (Subject of Investigation/LOI) Query on TES Download:Ideal Coordinates CCD File SDF format, chain L [auth B] SDF format, chain J [auth A] SDF format, chain H [auth D] SDF format, chain E [auth C] MOL2 format, chain L [auth B] MOL2 format, chain J [auth A] MOL2 format, chain H [auth D] MOL2 format, chain E [auth C] mmCIF format, chain L [auth B] mmCIF format, chain J [auth A] mmCIF format, chain H [auth D] mmCIF format, chain E [auth C]	E [auth C], H [auth D], J [auth A], L [auth B]	TESTOSTERONE C₁₉ H₂₈ O₂ MUMGGOZAMZWBJJ-DYKIIFRCSA-N		Interactions Focus chain E [auth C] Focus chain H [auth D] Focus chain J [auth A] Focus chain L [auth B] Interactions & Density Focus chain E [auth C] Focus chain H [auth D] Focus chain J [auth A] Focus chain L [auth B]
PO4 Query on PO4 Download:Ideal Coordinates CCD File SDF format, chain M [auth B] SDF format, chain K [auth A] SDF format, chain I [auth D] SDF format, chain G [auth C] SDF format, chain F [auth C] MOL2 format, chain M [auth B] MOL2 format, chain K [auth A] MOL2 format, chain I [auth D] MOL2 format, chain G [auth C] MOL2 format, chain F [auth C] mmCIF format, chain M [auth B] mmCIF format, chain K [auth A] mmCIF format, chain I [auth D] mmCIF format, chain G [auth C] mmCIF format, chain F [auth C]	F [auth C], G [auth C], I [auth D], K [auth A], M [auth B]	PHOSPHATE ION O₄ P NBIIXXVUZAFLBC-UHFFFAOYSA-K		Interactions Focus chain F [auth C] Focus chain G [auth C] Focus chain I [auth D] Focus chain K [auth A] Focus chain M [auth B] Interactions & Density Focus chain F [auth C] Focus chain G [auth C] Focus chain I [auth D] Focus chain K [auth A] Focus chain M [auth B]