8FW2

Cryo-EM structure of full-length human NLRC4 inflammasome with C11 symmetry


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Structural basis of the human NAIP/NLRC4 inflammasome assembly and pathogen sensing.

Matico, R.E.Yu, X.Miller, R.Somani, S.Ricketts, M.D.Kumar, N.Steele, R.A.Medley, Q.Berger, S.Faustin, B.Sharma, S.

(2024) Nat Struct Mol Biol 31: 82-91

  • DOI: https://doi.org/10.1038/s41594-023-01143-z
  • Primary Citation of Related Structures:  
    8FVU, 8FW2, 8FW9

  • PubMed Abstract: 

    The NLR family caspase activation and recruitment domain-containing 4 (NLRC4) inflammasome is a critical cytosolic innate immune machine formed upon the direct sensing of bacterial infection and in response to cell stress during sterile chronic inflammation. Despite its major role in instigating the subsequent host immune response, a more complete understanding of the molecular events in the formation of the NLRC4 inflammasome in humans is lacking. Here we identify Bacillus thailandensis type III secretion system needle protein (Needle) as a potent trigger of the human NLR family apoptosis inhibitory protein (NAIP)/NLRC4 inflammasome complex formation and determine its structural features by cryogenic electron microscopy. We also provide a detailed understanding of how type III secretion system pathogen components are sensed by human NAIP to form a cascade of NLRC4 protomer through a critical lasso-like motif, a 'lock-key' activation model and large structural rearrangement, ultimately forming the full human NLRC4 inflammasome. These results shed light on key regulatory mechanisms specific to the NLRC4 inflammasome assembly, and the innate immune modalities of pathogen sensing in humans.


  • Organizational Affiliation

    Structural and Protein Sciences, Johnson & Johnson Innovative Medicine, Spring House, PA, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
NLR family CARD domain-containing protein 4
A, B, C
1,030Homo sapiensMutation(s): 0 
Gene Names: NLRC4CARD12CLANCLAN1IPAFUNQ6189/PRO20215
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NPP4 (Homo sapiens)
Explore Q9NPP4 
Go to UniProtKB:  Q9NPP4
PHAROS:  Q9NPP4
GTEx:  ENSG00000091106 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9NPP4
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2024-01-03
    Type: Initial release
  • Version 1.1: 2024-01-10
    Changes: Database references
  • Version 1.2: 2024-01-17
    Changes: Database references
  • Version 1.3: 2024-01-31
    Changes: Database references