8FVU

Cryo-EM structure of human Needle/NAIP/NLRC4 (R288A)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Structural basis of the human NAIP/NLRC4 inflammasome assembly and pathogen sensing.

Matico, R.E.Yu, X.Miller, R.Somani, S.Ricketts, M.D.Kumar, N.Steele, R.A.Medley, Q.Berger, S.Faustin, B.Sharma, S.

(2024) Nat Struct Mol Biol 31: 82-91

  • DOI: https://doi.org/10.1038/s41594-023-01143-z
  • Primary Citation of Related Structures:  
    8FVU, 8FW2, 8FW9

  • PubMed Abstract: 

    The NLR family caspase activation and recruitment domain-containing 4 (NLRC4) inflammasome is a critical cytosolic innate immune machine formed upon the direct sensing of bacterial infection and in response to cell stress during sterile chronic inflammation. Despite its major role in instigating the subsequent host immune response, a more complete understanding of the molecular events in the formation of the NLRC4 inflammasome in humans is lacking. Here we identify Bacillus thailandensis type III secretion system needle protein (Needle) as a potent trigger of the human NLR family apoptosis inhibitory protein (NAIP)/NLRC4 inflammasome complex formation and determine its structural features by cryogenic electron microscopy. We also provide a detailed understanding of how type III secretion system pathogen components are sensed by human NAIP to form a cascade of NLRC4 protomer through a critical lasso-like motif, a 'lock-key' activation model and large structural rearrangement, ultimately forming the full human NLRC4 inflammasome. These results shed light on key regulatory mechanisms specific to the NLRC4 inflammasome assembly, and the innate immune modalities of pathogen sensing in humans.


  • Organizational Affiliation

    Structural and Protein Sciences, Johnson & Johnson Innovative Medicine, Spring House, PA, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Baculoviral IAP repeat-containing protein 11,409Homo sapiensMutation(s): 0 
Gene Names: NAIPBIRC1
UniProt & NIH Common Fund Data Resources
Find proteins for Q13075 (Homo sapiens)
Explore Q13075 
Go to UniProtKB:  Q13075
PHAROS:  Q13075
GTEx:  ENSG00000249437 
Entity Groups  
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UniProt GroupQ13075
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
NLR family CARD domain-containing protein 41,030Homo sapiensMutation(s): 1 
Gene Names: NLRC4CARD12CLANCLAN1IPAFUNQ6189/PRO20215
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NPP4 (Homo sapiens)
Explore Q9NPP4 
Go to UniProtKB:  Q9NPP4
PHAROS:  Q9NPP4
GTEx:  ENSG00000091106 
Entity Groups  
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UniProt GroupQ9NPP4
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Lethal factor,Type III secretion system proteinC [auth U]374Bacillus anthracisBurkholderia
This entity is chimeric
Mutation(s): 0 
Gene Names: lefpXO1-107BXA0172GBAA_pXO1_0172BPSS1548
EC: 3.4.24.83
UniProt
Find proteins for P15917 (Bacillus anthracis)
Explore P15917 
Go to UniProtKB:  P15917
Find proteins for Q63K18 (Burkholderia pseudomallei (strain K96243))
Explore Q63K18 
Go to UniProtKB:  Q63K18
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsP15917Q63K18
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2024-01-03
    Type: Initial release
  • Version 1.1: 2024-01-10
    Changes: Database references
  • Version 1.2: 2024-01-17
    Changes: Database references
  • Version 1.3: 2024-01-31
    Changes: Database references