8FUX

KpsC D160C ternary complex

PDB DOI: 10.2210/pdb8FUX/pdb

Classification: TRANSFERASE
Organism(s): Escherichia coli
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2023-01-18 Released: 2023-03-08
Deposition Author(s): Kimber, M.S., Doyle, L., Whitfield, C.
Funding Organization(s): Natural Sciences and Engineering Research Council (NSERC, Canada)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.20 Å
R-Value Free: 0.157
R-Value Work: 0.124
R-Value Observed: 0.125

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

Mechanism and linkage specificities of the dual retaining beta-Kdo glycosyltransferase modules of KpsC from bacterial capsule biosynthesis

Doyle, L., Ovchinnikova, O.G., Huang, B., Forrester, T.J.B., Lowary, T.L., Kimber, M.S., Whitfield, C.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Capsule polysaccharide export protein KpsC	A, B	329	Escherichia coli	Mutation(s): 1 Gene Names: kpsC
UniProt
Find proteins for A0A0H2Z2W8 (Escherichia coli O1:K1 / APEC) Explore A0A0H2Z2W8 Go to UniProtKB: A0A0H2Z2W8
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A0H2Z2W8
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 6 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
C5P (Subject of Investigation/LOI) Query on C5P Download Ideal Coordinates CCD File SDF format, chain E [auth A] MOL2 format, chain E [auth A]	E [auth A]	CYTIDINE-5'-MONOPHOSPHATE C₉ H₁₄ N₃ O₈ P IERHLVCPSMICTF-XVFCMESISA-N		Ligand Interaction
PXV (Subject of Investigation/LOI) Query on PXV Download Ideal Coordinates CCD File SDF format, chain F [auth A] SDF format, chain K [auth B] MOL2 format, chain F [auth A] MOL2 format, chain K [auth B]	F [auth A], K [auth B]	N-(8-hydroxyoctyl)-4-methoxybenzamide C₁₆ H₂₅ N O₃ NQLXMEWCEUVFAX-UHFFFAOYSA-N		Ligand Interaction
KDO Query on KDO Download Ideal Coordinates CCD File SDF format, chain G [auth A] SDF format, chain L [auth B] MOL2 format, chain G [auth A] MOL2 format, chain L [auth B]	G [auth A], L [auth B]	3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid C₈ H₁₄ O₈ NNLZBVFSCVTSLA-HXUQBWEZSA-N		Ligand Interaction
KD3 (Subject of Investigation/LOI) Query on KD3 Download Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain D [auth A] SDF format, chain J [auth B] SDF format, chain I [auth B] MOL2 format, chain C [auth A] MOL2 format, chain D [auth A] MOL2 format, chain J [auth B] MOL2 format, chain I [auth B]	C [auth A], D [auth A], I [auth B], J [auth B]	3-deoxy-beta-D-manno-oct-2-ulopyranosonic acid C₈ H₁₄ O₈ NNLZBVFSCVTSLA-FBXMPTEYSA-N		Ligand Interaction
PO4 Query on PO4 Download Ideal Coordinates CCD File SDF format, chain N [auth B] MOL2 format, chain N [auth B]	N [auth B]	PHOSPHATE ION O₄ P NBIIXXVUZAFLBC-UHFFFAOYSA-K		Ligand Interaction
CL Query on CL Download Ideal Coordinates CCD File SDF format, chain M [auth B] SDF format, chain H [auth A] MOL2 format, chain M [auth B] MOL2 format, chain H [auth A]	H [auth A], M [auth B]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Ligand Interaction