8EVU

Deposited: 2022-10-20 Released: 2022-11-16
Deposition Author(s): Fuller, J.R., Juarez, O.
Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Juarez, O., Fuller, J.R.

To be published.

Macromolecule Content

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Na(+)-translocating NADH-quinone reductase subunit A	A	446	Vibrio cholerae O395	Mutation(s): 0 Gene Names: nqrA, VC_2295 EC: 7.2.1.1
UniProt
Find proteins for A5F5X1 (Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)) Explore A5F5X1 Go to UniProtKB: A5F5X1
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A5F5X1
Sequence Annotations Expand
Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Na(+)-translocating NADH-quinone reductase subunit B	B	415	Vibrio cholerae O395	Mutation(s): 0 Gene Names: nqrB, VC_2294 EC: 7.2.1.1 Membrane Entity: Yes
UniProt
Find proteins for A5F5X0 (Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)) Explore A5F5X0 Go to UniProtKB: A5F5X0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A5F5X0
Sequence Annotations Expand
Reference Sequence

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Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Na(+)-translocating NADH-quinone reductase subunit C	C	257	Vibrio cholerae O395	Mutation(s): 0 Gene Names: nqrC, VC_2293 EC: 7.2.1.1 Membrane Entity: Yes
UniProt
Find proteins for A5F5Y7 (Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)) Explore A5F5Y7 Go to UniProtKB: A5F5Y7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A5F5Y7
Sequence Annotations Expand
Reference Sequence

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Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Na(+)-translocating NADH-quinone reductase subunit D	D	210	Vibrio cholerae O395	Mutation(s): 0 Gene Names: nqrD, VC_2292 EC: 7.2.1.1 Membrane Entity: Yes
UniProt
Find proteins for A5F5Y6 (Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)) Explore A5F5Y6 Go to UniProtKB: A5F5Y6
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A5F5Y6
Sequence Annotations Expand
Reference Sequence

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Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
Na(+)-translocating NADH-quinone reductase subunit E	E	198	Vibrio cholerae O395	Mutation(s): 0 Gene Names: nqrE, VC_2291 EC: 7.2.1.1 Membrane Entity: Yes
UniProt
Find proteins for A5F5Y5 (Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)) Explore A5F5Y5 Go to UniProtKB: A5F5Y5
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A5F5Y5
Sequence Annotations Expand
Reference Sequence

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Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
Na(+)-translocating NADH-quinone reductase subunit F	F	408	synthetic construct	Mutation(s): 0 Gene Names: nqrF, VC_2290 EC: 7.2.1.1 Membrane Entity: Yes
UniProt
Find proteins for A5F5Y4 (Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)) Explore A5F5Y4 Go to UniProtKB: A5F5Y4
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A5F5Y4
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FMN (Subject of Investigation/LOI) Query on FMN Download Ideal Coordinates CCD File SDF format, chain G [auth B] SDF format, chain J [auth C] MOL2 format, chain G [auth B] MOL2 format, chain J [auth C]	G [auth B], J [auth C]	FLAVIN MONONUCLEOTIDE C₁₇ H₂₁ N₄ O₉ P FVTCRASFADXXNN-SCRDCRAPSA-N		Interactions Focus chain G [auth B] Focus chain J [auth C] Interactions & Density Focus chain G [auth B] Focus chain J [auth C]
RBF (Subject of Investigation/LOI) Query on RBF Download Ideal Coordinates CCD File SDF format, chain H [auth B] MOL2 format, chain H [auth B]	H [auth B]	RIBOFLAVIN C₁₇ H₂₀ N₄ O₆ AUNGANRZJHBGPY-SCRDCRAPSA-N		Interactions Focus chain H [auth B] Interactions & Density Focus chain H [auth B]
UQ1 (Subject of Investigation/LOI) Query on UQ1 Download Ideal Coordinates CCD File SDF format, chain I [auth B] MOL2 format, chain I [auth B]	I [auth B]	UBIQUINONE-1 C₁₄ H₁₈ O₄ SOECUQMRSRVZQQ-UHFFFAOYSA-N		Interactions Focus chain I [auth B] Interactions & Density Focus chain I [auth B]
FES (Subject of Investigation/LOI) Query on FES Download Ideal Coordinates CCD File SDF format, chain K [auth E] MOL2 format, chain K [auth E]	K [auth E]	FE2/S2 (INORGANIC) CLUSTER Fe₂ S₂ NIXDOXVAJZFRNF-UHFFFAOYSA-N		Interactions Focus chain K [auth E] Interactions & Density Focus chain K [auth E]