8E3A

Purification of Enterovirus A71, strain 4643, WT capsid

  • Classification: VIRUS
  • Organism(s): Enterovirus A71
  • Expression System: Homo sapiens
  • Mutation(s): No 

  • Deposited: 2022-08-16 Released: 2023-08-30 
  • Deposition Author(s): Catching, A., Capponi, S., Andino, R.
  • Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 7.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

A tradeoff between enterovirus A71 particle stability and cell entry.

Catching, A.Te Yeh, M.Bianco, S.Capponi, S.Andino, R.

(2023) Nat Commun 14: 7450-7450

  • DOI: https://doi.org/10.1038/s41467-023-43029-0
  • Primary Citation of Related Structures:  
    8E2X, 8E2Y, 8E31, 8E38, 8E39, 8E3A, 8E3B, 8E3C

  • PubMed Abstract: 

    A central role of viral capsids is to protect the viral genome from the harsh extracellular environment while facilitating initiation of infection when the virus encounters a target cell. Viruses are thought to have evolved an optimal equilibrium between particle stability and efficiency of cell entry. In this study, we genetically perturb this equilibrium in a non-enveloped virus, enterovirus A71 to determine its structural basis. We isolate a single-point mutation variant with increased particle thermotolerance and decreased efficiency of cell entry. Using cryo-electron microscopy and molecular dynamics simulations, we determine that the thermostable native particles have acquired an expanded conformation that results in a significant increase in protein dynamics. Examining the intermediate states of the thermostable variant reveals a potential pathway for uncoating. We propose a sequential release of the lipid pocket factor, followed by internal VP4 and ultimately the viral RNA.


  • Organizational Affiliation

    Department of Microbiology and Immunology, University of California in San Francisco, San Francisco, CA, 94158, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
VP1297Enterovirus A71Mutation(s): 0 
UniProt
Find proteins for G9I191 (Human enterovirus 71)
Explore G9I191 
Go to UniProtKB:  G9I191
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG9I191
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
VP2254Enterovirus A71Mutation(s): 0 
UniProt
Find proteins for G9I191 (Human enterovirus 71)
Explore G9I191 
Go to UniProtKB:  G9I191
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG9I191
Sequence Annotations
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
VP3242Enterovirus A71Mutation(s): 0 
UniProt
Find proteins for G9I191 (Human enterovirus 71)
Explore G9I191 
Go to UniProtKB:  G9I191
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG9I191
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
VP469Enterovirus A71Mutation(s): 0 
UniProt
Find proteins for G9I191 (Human enterovirus 71)
Explore G9I191 
Go to UniProtKB:  G9I191
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG9I191
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 7.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
RECONSTRUCTIONRELION3.1

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesAI36178

Revision History  (Full details and data files)

  • Version 1.0: 2023-08-30
    Type: Initial release
  • Version 1.1: 2023-12-06
    Changes: Database references, Refinement description