Download MendeleyRecombinant mouse RyR2 triple phosphomimetic mutant S2807D/S2813D/S2030D in complex with FKBP12.6 and nanodisc under open-state conditions
Hu, Y., Iyer, K.A., Nayak, A.R., Eltit, J.M., Kurebayashi, N., Murayama, T., Samso, M.To be published.
8DVV
Recombinant mouse RyR2 triple phosphomimetic mutant S2807D/S2813D/S2030D in complex with FKBP12.6 and nanodisc under open-state conditions
- PDB DOI: https://doi.org/10.2210/pdb8DVV/pdb
- EM Map EMD-27746: EMDB EMDataResource
- Classification: MEMBRANE PROTEIN
- Organism(s): Mus musculus, Homo sapiens
- Expression System: Homo sapiens, Escherichia coli BL21
- Mutation(s): Yes
- Deposited: 2022-07-29 Released: 2024-01-31
- Funding Organization(s): National Institutes of Health/National Institute of Arthritis and Musculoskeletal and Skin Diseases (NIH/NIAMS), American Heart Association, National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 3.68 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ryanodine receptor 2 | 4,966 | Mus musculus | Mutation(s): 3 Gene Names: Ryr2 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for E9Q401 (Mus musculus) Explore E9Q401 Go to UniProtKB: E9Q401 | |||||
IMPC: MGI:99685 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | E9Q401 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Peptidyl-prolyl cis-trans isomerase FKBP1B | 107 | Homo sapiens | Mutation(s): 0 Gene Names: FKBP1B, FKBP12.6, FKBP1L, FKBP9, OTK4 EC: 5.2.1.8 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P68106 (Homo sapiens) Explore P68106 Go to UniProtKB: P68106 | |||||
PHAROS: P68106 GTEx: ENSG00000119782 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P68106 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | J [auth A], L [auth B], N [auth C], P [auth D] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| CA (Subject of Investigation/LOI) Query on CA | I [auth A], K [auth B], M [auth C], O [auth D] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 3.68 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
| Task | Software Package | Version |
|---|---|---|
| MODEL REFINEMENT | PHENIX | |
| RECONSTRUCTION | cryoSPARC | 3.1 |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-01-31 Deposition Author(s): Iyer, K.A., Hu, Y., Murayama, T., Samso, M.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute of Arthritis and Musculoskeletal and Skin Diseases (NIH/NIAMS) | United States | R01 AR068431 |
| American Heart Association | United States | 19POST34430178 |
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | U24 GM116789 |
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | U24 GM116790 |
Revision History (Full details and data files)
- Version 1.0: 2024-01-31
Type: Initial release
