8DPO | pdb_00008dpo

Crystal structure of Neisseria gonorrhoeae carbonic anhydrase with Acetazolamide

PDB DOI: https://doi.org/10.2210/pdb8DPO/pdb

Classification: LYASE
Organism(s): Neisseria gonorrhoeae
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-07-15 Released: 2023-07-19
Deposition Author(s): Marapaka, A.K., Das, C., Flaherty, D.P., Yadav, R.
Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free:
0.256 (Depositor), 0.255 (DCC)
R-Value Work:
0.192 (Depositor), 0.197 (DCC)
R-Value Observed:
0.195 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of Neisseria gonorrhoeae carbonic anhydrase with Acetazolamide

Marapaka, A.K., Das, C., Flaherty, D.P.

To be published.

Macromolecule Content

Total Structure Weight: 111.47 kDa
Atom Count: 7,169
Modeled Residue Count: 888
Deposited Residue Count: 972
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Carbonic anhydrase	A, B [auth C], C [auth E], D [auth G]	243	Neisseria gonorrhoeae	Mutation(s): 0 Gene Names: cah EC: 4.2.1.1
UniProt
Find proteins for Q50940 (Neisseria gonorrhoeae) Explore Q50940 Go to UniProtKB: Q50940
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q50940
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
AZM (Subject of Investigation/LOI) Query on AZM Download:Ideal Coordinates CCD File SDF format, chain N [auth E] SDF format, chain T [auth G] SDF format, chain I [auth C] SDF format, chain E [auth A] MOL2 format, chain N [auth E] MOL2 format, chain T [auth G] MOL2 format, chain I [auth C] MOL2 format, chain E [auth A] mmCIF format, chain N [auth E] mmCIF format, chain T [auth G] mmCIF format, chain I [auth C] mmCIF format, chain E [auth A]	E [auth A], I [auth C], N [auth E], T [auth G]	5-ACETAMIDO-1,3,4-THIADIAZOLE-2-SULFONAMIDE C₄ H₆ N₄ O₃ S₂ BZKPWHYZMXOIDC-UHFFFAOYSA-N		Interactions Focus chain E [auth A] Focus chain I [auth C] Focus chain N [auth E] Focus chain T [auth G] Interactions & Density Focus chain E [auth A] Focus chain I [auth C] Focus chain N [auth E] Focus chain T [auth G]
SO4 Query on SO4 Download:Ideal Coordinates CCD File SDF format, chain G [auth A] SDF format, chain H [auth A] SDF format, chain K [auth C] SDF format, chain M [auth C] SDF format, chain P [auth E] SDF format, chain R [auth E] SDF format, chain S [auth E] SDF format, chain V [auth G] SDF format, chain W [auth G] SDF format, chain Q [auth E] SDF format, chain L [auth C] MOL2 format, chain G [auth A] MOL2 format, chain H [auth A] MOL2 format, chain K [auth C] MOL2 format, chain M [auth C] MOL2 format, chain P [auth E] MOL2 format, chain R [auth E] MOL2 format, chain S [auth E] MOL2 format, chain V [auth G] MOL2 format, chain W [auth G] MOL2 format, chain Q [auth E] MOL2 format, chain L [auth C] mmCIF format, chain G [auth A] mmCIF format, chain H [auth A] mmCIF format, chain K [auth C] mmCIF format, chain M [auth C] mmCIF format, chain P [auth E] mmCIF format, chain R [auth E] mmCIF format, chain S [auth E] mmCIF format, chain V [auth G] mmCIF format, chain W [auth G] mmCIF format, chain Q [auth E] mmCIF format, chain L [auth C]	G [auth A] H [auth A] K [auth C] L [auth C] M [auth C] G [auth A], H [auth A], K [auth C], L [auth C], M [auth C], P [auth E], Q [auth E], R [auth E], S [auth E], V [auth G], W [auth G]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain G [auth A] Focus chain H [auth A] Focus chain K [auth C] Focus chain L [auth C] Focus chain M [auth C] Focus chain P [auth E] Focus chain Q [auth E] Focus chain R [auth E] Focus chain S [auth E] Focus chain V [auth G] Focus chain W [auth G] Interactions & Density Focus chain G [auth A] Focus chain H [auth A] Focus chain K [auth C] Focus chain L [auth C] Focus chain M [auth C] Focus chain P [auth E] Focus chain Q [auth E] Focus chain R [auth E] Focus chain S [auth E] Focus chain V [auth G] Focus chain W [auth G]
ZN Query on ZN Download:Ideal Coordinates CCD File SDF format, chain F [auth A] SDF format, chain U [auth G] SDF format, chain O [auth E] SDF format, chain J [auth C] MOL2 format, chain F [auth A] MOL2 format, chain U [auth G] MOL2 format, chain O [auth E] MOL2 format, chain J [auth C] mmCIF format, chain F [auth A] mmCIF format, chain U [auth G] mmCIF format, chain O [auth E] mmCIF format, chain J [auth C]	F [auth A], J [auth C], O [auth E], U [auth G]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain F [auth A] Focus chain J [auth C] Focus chain O [auth E] Focus chain U [auth G] Interactions & Density Focus chain F [auth A] Focus chain J [auth C] Focus chain O [auth E] Focus chain U [auth G]