8DD0

The structure of the native cardiac thin filament junction region

  • Classification: MOTOR PROTEIN
  • Organism(s): Sus scrofa
  • Mutation(s): No 

  • Deposited: 2022-06-17 Released: 2022-12-28 
  • Deposition Author(s): Galkin, V.E., Risi, C.M.
  • Funding Organization(s): National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI), National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

High-resolution cryo-EM structure of the junction region of the native cardiac thin filament in relaxed state.

Risi, C.M.Belknap, B.White, H.D.Dryden, K.Pinto, J.R.Chase, P.B.Galkin, V.E.

(2023) PNAS Nexus 2: pgac298-pgac298

  • DOI: https://doi.org/10.1093/pnasnexus/pgac298
  • Primary Citation of Related Structures:  
    8DD0

  • PubMed Abstract: 

    Cardiac contraction depends on molecular interactions among sarcomeric proteins coordinated by the rising and falling intracellular Ca 2+ levels. Cardiac thin filament (cTF) consists of two strands composed of actin, tropomyosin (Tm), and equally spaced troponin (Tn) complexes forming regulatory units. Tn binds Ca 2+ to move Tm strand away from myosin-binding sites on actin to enable actomyosin cross-bridges required for force generation. The Tn complex has three subunits-Ca 2+ -binding TnC, inhibitory TnI, and Tm-binding TnT. Tm strand is comprised of adjacent Tm molecules that overlap "head-to-tail" along the actin filament. The N-terminus of TnT (e.g., TnT1) binds to the Tm overlap region to form the cTF junction region-the region that connects adjacent regulatory units and confers to cTF internal cooperativity. Numerous studies have predicted interactions among actin, Tm, and TnT1 within the junction region, although a direct structural description of the cTF junction region awaited completion. Here, we report a 3.8 Å resolution cryo-EM structure of the native cTF junction region at relaxing (pCa 8) Ca 2+ conditions. We provide novel insights into the "head-to-tail" interactions between adjacent Tm molecules and interactions between the Tm junction with F-actin. We demonstrate how TnT1 stabilizes the Tm overlap region via its interactions with the Tm C- and N-termini and actin. Our data show that TnT1 works as a joint that anchors the Tm overlap region to actin, which stabilizes the relaxed state of the cTF. Our structure provides insight into the molecular basis of cardiac diseases caused by missense mutations in TnT1.


  • Organizational Affiliation

    Department of Physiological Sciences, Eastern Virginia Medical School, Norfolk, VA 23507, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Actin, alpha cardiac muscle 1
A, B, C, D, E
A, B, C, D, E, F
377Sus scrofaMutation(s): 0 
UniProt
Find proteins for P68137 (Sus scrofa)
Explore P68137 
Go to UniProtKB:  P68137
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP68137
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Tropomyosin alpha-1 chain
G, H, I, J, L
G, H, I, J, L, M, N, O
284Sus scrofaMutation(s): 0 
UniProt
Find proteins for P42639 (Sus scrofa)
Explore P42639 
Go to UniProtKB:  P42639
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP42639
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Troponin T2, cardiac type
K, P
295Sus scrofaMutation(s): 0 
UniProt
Find proteins for I3LS66 (Sus scrofa)
Explore I3LS66 
Go to UniProtKB:  I3LS66
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupI3LS66
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ADP
Query on ADP

Download Ideal Coordinates CCD File 
AA [auth F]
Q [auth A]
S [auth B]
U [auth C]
W [auth D]
AA [auth F],
Q [auth A],
S [auth B],
U [auth C],
W [auth D],
Y [auth E]
ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
MG
Query on MG

Download Ideal Coordinates CCD File 
BA [auth F]
R [auth A]
T [auth B]
V [auth C]
X [auth D]
BA [auth F],
R [auth A],
T [auth B],
V [auth C],
X [auth D],
Z [auth E]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
RECONSTRUCTIONRELION3.08

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)United StatesHL160966
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM116790
National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)United StatesHL140925

Revision History  (Full details and data files)

  • Version 1.0: 2022-12-28
    Type: Initial release
  • Version 1.1: 2023-02-08
    Changes: Database references