8D4A

Cas12a2 quaternary complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.74 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

RNA targeting unleashes indiscriminate nuclease activity of CRISPR-Cas12a2.

Bravo, J.P.K.Hallmark, T.Naegle, B.Beisel, C.L.Jackson, R.N.Taylor, D.W.

(2023) Nature 613: 582-587

  • DOI: https://doi.org/10.1038/s41586-022-05560-w
  • Primary Citation of Related Structures:  
    8D49, 8D4A, 8D4B

  • PubMed Abstract: 

    Cas12a2 is a CRISPR-associated nuclease that performs RNA-guided, sequence-nonspecific degradation of single-stranded RNA, single-stranded DNA and double-stranded DNA following recognition of a complementary RNA target, culminating in abortive infection 1 . Here we report structures of Cas12a2 in binary, ternary and quaternary complexes to reveal a complete activation pathway. Our structures reveal that Cas12a2 is autoinhibited until binding a cognate RNA target, which exposes the RuvC active site within a large, positively charged cleft. Double-stranded DNA substrates are captured through duplex distortion and local melting, stabilized by pairs of 'aromatic clamp' residues that are crucial for double-stranded DNA degradation and in vivo immune system function. Our work provides a structural basis for this mechanism of abortive infection to achieve population-level immunity, which can be leveraged to create rational mutants that degrade a spectrum of collateral substrates.


  • Organizational Affiliation

    Department of Molecular Biosciences, University of Texas at Austin, Austin, TX, USA.


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
OrfB_Zn_ribbon domain-containing protein1,232Sulfuricurvum sp. PC08-66Mutation(s): 0 
Gene Names: KU37_03970
UniProt
Find proteins for A0A0C2W1L1 (Sulfuricurvum sp. PC08-66)
Explore A0A0C2W1L1 
Go to UniProtKB:  A0A0C2W1L1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0C2W1L1
Sequence Annotations
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Entity ID: 2
MoleculeChains LengthOrganismImage
RNA (41-MER)41synthetic construct
Sequence Annotations
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Entity ID: 3
MoleculeChains LengthOrganismImage
RNA (28-MER)28synthetic construct
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Entity ID: 4
MoleculeChains LengthOrganismImage
DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3')11synthetic construct
Sequence Annotations
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Entity ID: 5
MoleculeChains LengthOrganismImage
DNA (5'-D(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')E [auth G]11synthetic construct
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.74 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR35GM138348
Welch FoundationUnited StatesF-1938
Cancer Prevention and Research Institute of Texas (CPRIT)United StatesRR160088

Revision History  (Full details and data files)

  • Version 1.0: 2023-01-18
    Type: Initial release
  • Version 1.1: 2023-02-01
    Changes: Database references