8CYO | pdb_00008cyo

Nurr1 Covalently Bound to a Synthetic Ligand, 10.25, via a Disulfide Bond

PDB DOI: https://doi.org/10.2210/pdb8CYO/pdb

Classification: TRANSCRIPTION
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-05-24 Released: 2024-01-17
Deposition Author(s): Bruning, J.M., Liu, J., England, P.M.
Funding Organization(s): National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.41 Å
R-Value Free:
0.249 (Depositor), 0.254 (DCC)
R-Value Work:
0.213 (Depositor), 0.218 (DCC)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.2 of the entry. See complete history.

Literature

Nurr1 Covalently Bound to a Synthetic Ligand, 10.25, via a Disulfide Bond

Holder, P.

To be published.

Macromolecule Content

Total Structure Weight: 57.05 kDa
Atom Count: 3,835
Modeled Residue Count: 469
Deposited Residue Count: 498
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Nuclear receptor subfamily 4 group A member 2	A [auth B], B [auth A]	249	Homo sapiens	Mutation(s): 0 Gene Names: NR4A2, NOT, NURR1, TINUR
UniProt & NIH Common Fund Data Resources
Find proteins for P43354 (Homo sapiens) Explore P43354 Go to UniProtKB: P43354
PHAROS: P43354 GTEx: ENSG00000153234
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P43354
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
OBJ (Subject of Investigation/LOI) Query on OBJ Download:Ideal Coordinates CCD File SDF format, chain I [auth A] MOL2 format, chain I [auth A] mmCIF format, chain I [auth A]	I [auth A]	2-(3,4-dichlorophenoxy)-N-(2-sulfanylethyl)acetamide C₁₀ H₁₁ Cl₂ N O₂ S DCPNTZSINCTHRC-UHFFFAOYSA-N		Interactions Focus chain I [auth A] Interactions & Density Focus chain I [auth A]
CL Query on CL Download:Ideal Coordinates CCD File SDF format, chain C [auth B] SDF format, chain D [auth B] SDF format, chain E [auth B] SDF format, chain G [auth B] SDF format, chain H [auth B] SDF format, chain J [auth A] SDF format, chain F [auth B] MOL2 format, chain C [auth B] MOL2 format, chain D [auth B] MOL2 format, chain E [auth B] MOL2 format, chain G [auth B] MOL2 format, chain H [auth B] MOL2 format, chain J [auth A] MOL2 format, chain F [auth B] mmCIF format, chain C [auth B] mmCIF format, chain D [auth B] mmCIF format, chain E [auth B] mmCIF format, chain G [auth B] mmCIF format, chain H [auth B] mmCIF format, chain J [auth A] mmCIF format, chain F [auth B]	C [auth B] D [auth B] E [auth B] F [auth B] G [auth B] C [auth B], D [auth B], E [auth B], F [auth B], G [auth B], H [auth B], J [auth A]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain C [auth B] Focus chain D [auth B] Focus chain E [auth B] Focus chain F [auth B] Focus chain G [auth B] Focus chain H [auth B] Focus chain J [auth A] Interactions & Density Focus chain C [auth B] Focus chain D [auth B] Focus chain E [auth B] Focus chain F [auth B] Focus chain G [auth B] Focus chain H [auth B] Focus chain J [auth A]