8CLS

Drosophila melanogaster insulin receptor ectodomain in complex with DILP5


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 

Currently 8CLS does not have a validation slider image.


This is version 1.0 of the entry. See complete history


Literature

Structural conservation of insulin/IGF signalling axis at the insulin receptors level in Drosophila and humans.

Viola, C.M.Frittmann, O.Jenkins, H.T.Shafi, T.De Meyts, P.Brzozowski, A.M.

(2023) Nat Commun 14: 6271-6271

  • DOI: https://doi.org/10.1038/s41467-023-41862-x
  • Primary Citation of Related Structures:  
    8CLS

  • PubMed Abstract: 

    The insulin-related hormones regulate key life processes in Metazoa, from metabolism to growth, lifespan and aging, through an evolutionarily conserved insulin signalling axis (IIS). In humans the IIS axis is controlled by insulin, two insulin-like growth factors, two isoforms of the insulin receptor (hIR-A and -B), and its homologous IGF-1R. In Drosophila, this signalling engages seven insulin-like hormones (DILP1-7) and a single receptor (dmIR). This report describes the cryoEM structure of the dmIR ectodomain:DILP5 complex, revealing high structural homology between dmIR and hIR. The excess of DILP5 yields dmIR complex in an asymmetric 'T' conformation, similar to that observed in some complexes of human IRs. However, dmIR binds three DILP5 molecules in a distinct arrangement, showing also dmIR-specific features. This work adds structural support to evolutionary conservation of the IIS axis at the IR level, and also underpins a better understanding of an important model organism.


  • Organizational Affiliation

    York Structural Biology Laboratory, Department of Chemistry, University of York, Heslington, York, YO10 5DD, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Insulin-like receptor
A, B
1,068Drosophila melanogasterMutation(s): 0 
Gene Names: InRdinrDir-aInr-aCG18402
EC: 2.7.10.1
UniProt
Find proteins for P09208 (Drosophila melanogaster)
Explore P09208 
Go to UniProtKB:  P09208
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP09208
Sequence Annotations
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  • Reference Sequence

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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Probable insulin-like peptide 5 A chain
C, E, G
25Drosophila melanogasterMutation(s): 0 
UniProt
Find proteins for Q7KUD5 (Drosophila melanogaster)
Explore Q7KUD5 
Go to UniProtKB:  Q7KUD5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7KUD5
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Probable insulin-like peptide 5
D, F, H
28Drosophila melanogasterMutation(s): 0 
UniProt
Find proteins for Q7KUD5 (Drosophila melanogaster)
Explore Q7KUD5 
Go to UniProtKB:  Q7KUD5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7KUD5
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1_4487:

Structure Validation

Currently 8CLS does not have a validation slider image.



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Medical Research Council (MRC, United Kingdom)United KingdomMR/R009066/1
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/W003783/1

Revision History  (Full details and data files)

  • Version 1.0: 2023-12-20
    Type: Initial release