8CA4

Cryo-EM structure NDUFS4 knockout complex I from Mus musculus heart (Class 2 N-domain).


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.25 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structural insights into respiratory complex I deficiency and assembly from the mitochondrial disease-related ndufs4 -/- mouse.

Yin, Z.Agip, A.A.Bridges, H.R.Hirst, J.

(2024) EMBO J 43: 225-249

  • DOI: https://doi.org/10.1038/s44318-023-00001-4
  • Primary Citation of Related Structures:  
    8C2S, 8CA1, 8CA3, 8CA4, 8CA5

  • PubMed Abstract: 

    Respiratory complex I (NADH:ubiquinone oxidoreductase) is essential for cellular energy production and NAD + homeostasis. Complex I mutations cause neuromuscular, mitochondrial diseases, such as Leigh Syndrome, but their molecular-level consequences remain poorly understood. Here, we use a popular complex I-linked mitochondrial disease model, the ndufs4 -/- mouse, to define the structural, biochemical, and functional consequences of the absence of subunit NDUFS4. Cryo-EM analyses of the complex I from ndufs4 -/- mouse hearts revealed a loose association of the NADH-dehydrogenase module, and discrete classes containing either assembly factor NDUFAF2 or subunit NDUFS6. Subunit NDUFA12, which replaces its paralogue NDUFAF2 in mature complex I, is absent from all classes, compounding the deletion of NDUFS4 and preventing maturation of an NDUFS4-free enzyme. We propose that NDUFAF2 recruits the NADH-dehydrogenase module during assembly of the complex. Taken together, the findings provide new molecular-level understanding of the ndufs4 -/- mouse model and complex I-linked mitochondrial disease.


  • Organizational Affiliation

    The Medical Research Council Mitochondrial Biology Unit, University of Cambridge, Keith Peters Building, Cambridge Biomedical Campus, Cambridge, UK.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrialA [auth E]248Mus musculusMutation(s): 0 
EC: 7.1.1.2
UniProt & NIH Common Fund Data Resources
Find proteins for Q9D6J6 (Mus musculus)
Explore Q9D6J6 
Go to UniProtKB:  Q9D6J6
IMPC:  MGI:1920150
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UniProt GroupQ9D6J6
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrialB [auth F]464Mus musculusMutation(s): 0 
EC: 7.1.1.2
UniProt & NIH Common Fund Data Resources
Find proteins for Q91YT0 (Mus musculus)
Explore Q91YT0 
Go to UniProtKB:  Q91YT0
IMPC:  MGI:107851
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UniProt GroupQ91YT0
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrialC [auth G]727Mus musculusMutation(s): 0 
EC: 7.1.1.2
UniProt & NIH Common Fund Data Resources
Find proteins for Q91VD9 (Mus musculus)
Explore Q91VD9 
Go to UniProtKB:  Q91VD9
IMPC:  MGI:2443241
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UniProt GroupQ91VD9
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2D [auth S]99Mus musculusMutation(s): 0 
UniProt
Find proteins for Q9CQ75 (Mus musculus)
Explore Q9CQ75 
Go to UniProtKB:  Q9CQ75
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UniProt GroupQ9CQ75
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrialE [auth s]104Mus musculusMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q8BK30 (Mus musculus)
Explore Q8BK30 
Go to UniProtKB:  Q8BK30
IMPC:  MGI:1890894
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UniProt GroupQ8BK30
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.25 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Medical Research Council (MRC, United Kingdom)United KingdomMC_U105663141
Medical Research Council (MRC, United Kingdom)United KingdomMC_UU_00015/2
Medical Research Council (MRC, United Kingdom)United KingdomMC_UU_00028/1

Revision History  (Full details and data files)

  • Version 1.0: 2023-12-20
    Type: Initial release
  • Version 1.1: 2024-01-17
    Changes: Data processing, Database references
  • Version 1.2: 2024-01-31
    Changes: Database references