8CA0

Macrophage inhibitory factor (MIF) in complex with small molecule PAV174

PDB DOI: https://doi.org/10.2210/pdb8CA0/pdb
BMRB: 34783

Classification: PROTEIN BINDING
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-01-24 Released: 2024-02-07
Deposition Author(s): Mueller, A., Torres, F., Roland, R., Korth, C.
Funding Organization(s): German Research Foundation (DFG)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 4
Conformers Submitted: 4
Selection Criteria: target function

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Oxidized MIF is a drug target at the molecular intersection between immune activation and tau cellular pathology

Mueller-Schiffmann, A., Torres, F., Kitaygorodskyy, A., Ramani, A., Alatza, A., Tschirner, S., Prikulis, I., Yu, S., Dey, D., Mallesh, S., Prasad, D., Solas, D., Bader, V., Rozemuller, A., Wray, S., Gopalakrishnan, J., Riek, R., Lingappa, V.R., Korth, C.

To be published.

Macromolecule Content

Total Structure Weight: 37.44 kDa
Atom Count: 2,625
Modelled Residue Count: 342
Deposited Residue Count: 342
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Macrophage migration inhibitory factor	A, B, C	114	Homo sapiens	Mutation(s): 0 Gene Names: MIF, GLIF, MMIF EC: 5.3.2.1 (PDB Primary Data), 5.3.3.12 (PDB Primary Data)
UniProt & NIH Common Fund Data Resources
Find proteins for P14174 (Homo sapiens) Explore P14174 Go to UniProtKB: P14174
PHAROS: P14174 GTEx: ENSG00000240972
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P14174
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
VIU (Subject of Investigation/LOI) Query on VIU Download Ideal Coordinates CCD File SDF format, chain D [auth A] MOL2 format, chain D [auth A]	D [auth A]	1-ethyl-9-methyl-3,7-dipyrrolidin-1-yl-phenothiazine C₂₃ H₂₉ N₃ S PKXKXYSZKVTBNQ-UHFFFAOYSA-N		Interactions Focus chain D [auth A]

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 4
Conformers Submitted: 4
Selection Criteria: target function

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-02-07

Deposition Author(s):

Funding Organization	Location	Grant Number
German Research Foundation (DFG)	Germany	KO1679/10-1, 15-1

Revision History (Full details and data files)

Version 1.0: 2024-02-07
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.