8C6F

Light SFX structure of D.m(6-4)photolyase at 400fs time delay

• PDB DOI: https://doi.org/10.2210/pdb8C6F/pdb

• Classification: FLAVOPROTEIN
• Organism(s): Drosophila melanogaster
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2023-01-11 Released: 2023-11-01 
• Deposition Author(s): Cellini, A., Kumar, M., Nimmrich, A., Mutisya, J., Furrer, A., Beale, E.V., Carrillo, M., Malla, T.N., Maj, P., Dworkowskic, F., Cirelli, C., Ozerovi, D., Bacellar, C., Strandfuss, J., Weinert, T., Ihalainen, J.A., Yuan Wahlgren, W., Westenhoff, S.
• Funding Organization(s): European Research Council (ERC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free: 0.328 
• R-Value Work: 0.292 
• R-Value Observed: 0.294 

Literature

Femtosecond serial crystallography resolves conformational changes which guide long-range electron transfer in a photolyase

Cellini, A., Kumar, S., Nimmrich, A., Mutisya, J., Furrer, A., Beale, E.V., Carillo, M., Malla, T.N., Maj, P., Dworkowskic, F., Cirelli, C., Johnson, P., Ozerov, D., Bacellar, C., Strandfuss, J., Weinert, T., Ihalainen, J.A., Yuan Wahlgren, W., Westenhoff, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 58.96 kDa 
• Atom Count: 4,292 
• Modelled Residue Count: 500 
• Deposited Residue Count: 500 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cryptochrome-1	A	500	Drosophila melanogaster	Mutation(s): 0  Gene Names: phr6-4, CG2488
UniProt
Find proteins for Q8SXK5 (Drosophila melanogaster) Explore Q8SXK5  Go to UniProtKB:  Q8SXK5

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
FAD (Subject of Investigation/LOI)	B [auth A]	FLAVIN-ADENINE DINUCLEOTIDE C27 H33 N9 O15 P2 VWWQXMAJTJZDQX-UYBVJOGSSA-N
GOL	C [auth A]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free: 0.328 
• R-Value Work: 0.292 
• R-Value Observed: 0.294 
• Space Group: P 4₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 103.9	α = 90
b = 103.9	β = 90
c = 52.19	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
CrystFEL	data reduction
CrystFEL	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-11-01 
Deposition Author(s): Cellini, A., Kumar, M., Nimmrich, A., Mutisya, J., Furrer, A., Beale, E.V., Carrillo, M., Malla, T.N., Maj, P., Dworkowskic, F., Cirelli, C., Ozerovi, D., Bacellar, C., Strandfuss, J., Weinert, T., Ihalainen, J.A., Yuan Wahlgren, W., Westenhoff, S.

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Funding Organization	Location	Grant Number
European Research Council (ERC)	European Union	--

Revision History  

• Version 1.0: 2023-11-01
  Type: Initial release