Structural insights into epitope-paratope interactions of monoclonal antibody targeting CEACAM5-expressing tumors
Rak, A., Kumar, A., Duffi, F., Gagnaire, M., Rapisarda, C., Bertrand, T.(2023) Res Sq 
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
(2023) Res Sq 
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Tusamitamab Fab heavy Chain | A [auth H] | 234 | Mus sp. | Mutation(s): 0  | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Tusamitamab Light Chain | B [auth L] | 214 | Mus sp. | Mutation(s): 0  | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Carcinoembryonic antigen-related cell adhesion molecule 5 | 193 | Homo sapiens | Mutation(s): 0  Gene Names: CEACAM5, CEA | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P06731 (Homo sapiens) Explore P06731  Go to UniProtKB:  P06731 | |||||
PHAROS:  P06731 GTEx:  ENSG00000105388  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P06731 | ||||
Glycosylation | |||||
Glycosylation Sites: 6 | Go to GlyGen: P06731-1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | D [auth A], F [auth D] | 2 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G42666HT GlyCosmos:  G42666HT GlyGen:  G42666HT |
Entity ID: 5 | |||||
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Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | E [auth B] | 6 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G82348BZ GlyCosmos:  G82348BZ GlyGen:  G82348BZ |
Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | G [auth C], H [auth C], I [auth C] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |
Task | Software Package | Version |
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RECONSTRUCTION | cryoSPARC | 3.2 |
MODEL REFINEMENT | PHENIX | 1.19.2 |
Funding Organization | Location | Grant Number |
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Other private | France | -- |