crystal structure of antibody Fab with SiaLac-amidine-Lys
Moynie, L., Naismith, J.H., Sattentau, Q., Deimel, L., Khan, A., Davis, B., Baldwin, A., Buchanan, C.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
BAR-1 Fab heavy chain | A [auth H], C [auth A] | 227 | Mus musculus | Mutation(s): 0  | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
BAR-1 Fab light chain | B [auth L], D [auth B] | 219 | Mus musculus | Mutation(s): 0  | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SL9 (Subject of Investigation/LOI) Query on SL9 | N [auth L], U [auth B] | (2~{S})-2-acetamido-6-(2-sulfanylethanimidoylamino)hexanamide C10 H20 N4 O2 S VZQPDVWZAWZPHB-QMMMGPOBSA-N | |||
MES Query on MES | H, P [auth A] | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID C6 H13 N O4 S SXGZJKUKBWWHRA-UHFFFAOYSA-N | |||
GOL Query on GOL | I [auth H], J [auth H], K [auth L], Q [auth A], R [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
ZN Query on ZN | G [auth H] L M [auth L] O [auth A] S [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |
Entity ID: 3 | |||||
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ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_002443 Query on PRD_002443 | E [auth C], F [auth D] | SiaLac-amidine-Lys | Oligosaccharide /  |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 115.91 | α = 90 |
b = 130.68 | β = 123.66 |
c = 76.91 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
xia2 | data reduction |
xia2 | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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UK Research and Innovation (UKRI) | United Kingdom | -- |