8BJM

Human full length RAD52 undecamer.

PDB DOI: https://doi.org/10.2210/pdb8BJM/pdb
EM Map EMD-16089: EMDB EMDataResource

Classification: DNA BINDING PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-11-04 Released: 2023-11-15
Deposition Author(s): Marotta, R., Balboni, B., Girotto, S., Cavalli, A.
Funding Organization(s): iNEXT-Discovery, Italian Association for Cancer Research

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.20 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Human full length RAD52 undecamer

Marotta, R., Balboni, B., Girotto, S., Cavalli, A.

To be published.

Macromolecule Content

Total Structure Weight: 528.49 kDa
Atom Count: 16,655
Modelled Residue Count: 2,050
Deposited Residue Count: 4,752
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA repair protein RAD52 homolog	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K	432	Homo sapiens	Mutation(s): 0 Gene Names: RAD52
UniProt & NIH Common Fund Data Resources
Find proteins for P43351 (Homo sapiens) Explore P43351 Go to UniProtKB: P43351
PHAROS: P43351 GTEx: ENSG00000002016
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P43351
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.20 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX
RECONSTRUCTION	RELION	4.0

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2023-11-15

Deposition Author(s):

Funding Organization	Location	Grant Number
iNEXT-Discovery	European Union	15983
Italian Association for Cancer Research	Italy	IG 2018 Id.21386

Revision History (Full details and data files)

Version 1.0: 2023-11-15
Type: Initial release
Version 1.1: 2024-02-28
Changes: Structure summary

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.