8BIA | pdb_00008bia

Crystal structure of Scribble PDZ1 with PTHR

PDB DOI: https://doi.org/10.2210/pdb8BIA/pdb

Classification: PROTEIN BINDING
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2022-11-02 Released: 2023-11-15
Deposition Author(s): Stewart, B.Z., Kvansakul, M.
Funding Organization(s): National Health and Medical Research Council (NHMRC, Australia), Australian Research Council (ARC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free:
0.271 (Depositor), 0.271 (DCC)
R-Value Work:
0.252 (Depositor), 0.251 (DCC)
R-Value Observed:
0.253 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 8BIA

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of Scribble PDZ1 with human papillomavirus strain 16 E6 peptide

Stewart, B.Z., Caria, S., Humbert, P.O., Kvansakul, M.

To be published.

Macromolecule Content

Total Structure Weight: 13.44 kDa
Atom Count: 870
Modeled Residue Count: 110
Deposited Residue Count: 124
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein scribble homolog	A	116	Homo sapiens	Mutation(s): 0 Gene Names: SCRIB, CRIB1, KIAA0147, LAP4, SCRB1, VARTUL
UniProt & NIH Common Fund Data Resources
Find proteins for Q14160 (Homo sapiens) Explore Q14160 Go to UniProtKB: Q14160
PHAROS: Q14160 GTEx: ENSG00000180900
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q14160
Sequence Annotations Expand
Reference Sequence

Find similar proteins by: Sequence | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Parathyroid hormone/parathyroid hormone-related peptide receptor	B [auth C]	8	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q03431 (Homo sapiens) Explore Q03431 Go to UniProtKB: Q03431
PHAROS: Q03431 GTEx: ENSG00000160801
Entity Groups
UniProt Group	Q03431
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PO4 Query on PO4 Download:Ideal Coordinates CCD File SDF format, chain C MOL2 format, chain C mmCIF format, chain C	C	PHOSPHATE ION O₄ P NBIIXXVUZAFLBC-UHFFFAOYSA-K		Interactions Focus chain C Interactions & Density Focus chain C

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free: 0.271 (Depositor), 0.271 (DCC)
R-Value Work: 0.252 (Depositor), 0.251 (DCC)
R-Value Observed: 0.253 (Depositor)

Space Group: I 4₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 53.161	α = 90
b = 53.161	β = 90
c = 217.01	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
DIALS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2023-11-15

Deposition Author(s):

Funding Organization	Location	Grant Number
National Health and Medical Research Council (NHMRC, Australia)	Australia	APP1103871
Australian Research Council (ARC)	Australia	FT130101349

Revision History (Full details and data files)

Version 1.0: 2023-11-15
Type: Initial release
Version 1.1: 2026-03-04
Changes: Refinement description, Structure summary

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.