Download MendeleyCrystal structure of feruloyl esterase wtsFae1B in complex with xylobiose
Wilkens, C.To be published.
8BF3
Crystal structure of feruloyl esterase wtsFae1B in complex with xylobiose
- PDB DOI: 10.2210/pdb8BF3/pdb
- Classification: SUGAR BINDING PROTEIN
- Organism(s): uncultured bacterium
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2022-10-23 Released: 2022-11-30
- Funding Organization(s): Other government
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.19 Å
- R-Value Free: 0.138
- R-Value Work: 0.117
- R-Value Observed: 0.117
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ferulic acid esterase | A, B | 388 | uncultured bacterium | Mutation(s): 0 EC: 3.1.1.73 |  |
UniProt | |||||
Find proteins for A0A5S8WFA0 (uncultured bacterium) Explore A0A5S8WFA0 Go to UniProtKB: A0A5S8WFA0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A5S8WFA0 | ||||
Protein Feature ViewExpand | |||||
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Oligosaccharides
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Chain Length | 2D Diagram | Glycosylation | 3D Interactions |
| beta-D-xylopyranose-(1-4)-beta-D-xylopyranose | C | 2 |  | N/A | Oligosaccharides Interaction |
Glycosylation Resources | |||||
GlyTouCan: G87728WL GlyCosmos: G87728WL | |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| XYP (Subject of Investigation/LOI) Query on XYP | L [auth B] | beta-D-xylopyranose C5 H10 O5 SRBFZHDQGSBBOR-KKQCNMDGSA-N |  | Ligand Interaction | |
| EDO Query on EDO | D [auth A], E [auth A], F [auth A], G [auth A], H [auth A], | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.19 Å
- R-Value Free: 0.138
- R-Value Work: 0.117
- R-Value Observed: 0.117
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 65.58 | α = 90 |
| b = 99.35 | β = 90 |
| c = 132.94 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| MxCuBE | data collection |
| XDS | data reduction |
| Coot | model building |
| PHASER | phasing |
| XDS | data scaling |
Entry History & Funding Information
Deposition Data
- Released Date: 2022-11-30 Deposition Author(s): Wilkens, C.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Other government | Denmark | -- |
Revision History (Full details and data files)
- Version 1.0: 2022-11-30
Type: Initial release
