Structure of SARS-CoV-2 NSP3 macrodomain in complex with alpha-1-O-Me-ADPR
Sander, S., Tidow, H., Fliegert, R., Sandmann, M.To be published.
Experimental Data Snapshot
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Papain-like protease nsp3 | 179 | Severe acute respiratory syndrome coronavirus 2 | Mutation(s): 0  EC: 3.4.19.12 (PDB Primary Data), 3.4.22 (PDB Primary Data) | ||
UniProt | |||||
Find proteins for P0DTC1 (Severe acute respiratory syndrome coronavirus 2) Explore P0DTC1  Go to UniProtKB:  P0DTC1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0DTC1 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
RVK (Subject of Investigation/LOI) Query on RVK | B [auth A] | Adenosine 5'-diphosphoric acid beta-[(3beta,4beta-dihydroxy-5beta-methoxytetrahydrofuran-2alpha-yl)methyl] estere C16 H25 N5 O14 P2 XNNSDOSOBTWHPT-DBXCYWGHSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 113.129 | α = 90 |
b = 113.129 | β = 90 |
c = 41.949 | γ = 120 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
XDS | data reduction |
Aimless | data scaling |
PHASER | phasing |
Coot | model building |
Funding Organization | Location | Grant Number |
---|---|---|
German Research Foundation (DFG) | Germany | SFB 1328 |