8AXB

Cryo-EM structure of Cas12k-sgRNA binary complex (type V-K CRISPR-associated transposon)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.87 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

Structural prediction of the Cas12k interaction with the transposon pre-integration complex

Tenjo-Castano, F., Sofos, N., Stella, S., Molina, R., Pape, T., Lopez-Mendez, B., Stutzke, L.S., Temperini, P., Montoya, G.

To be published.

Macromolecules

Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cas12k651Scytonema hofmanniiMutation(s): 0 
UniProt
Find proteins for A0A8M0FGU0 (Scytonema hofmannii)
Explore A0A8M0FGU0 
Go to UniProtKB:  A0A8M0FGU0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A8M0FGU0
Sequence Annotations
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  • Reference Sequence
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(by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains LengthOrganismImage
sgRNA261Scytonema hofmannii
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.87 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
RECONSTRUCTIONcryoSPARC3.3.1

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
Novo Nordisk FoundationDenmarkNNF0024386
Novo Nordisk FoundationDenmarkNNF14CC0001
Novo Nordisk FoundationDenmarkNNF17SA0030214
Novo Nordisk FoundationDenmarkNNF18OC0055061

Revision History  (Full details and data files)

  • Version 1.0: 2024-04-10
    Type: Initial release