8ARF

Crystal structure of the N-terminal parallel dimeric coiled-coil region of the human kinetochore associated protein Spindly


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 0.290 
  • R-Value Work: 0.249 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Conformational transitions of the Spindly adaptor underlie its interaction with Dynein and Dynactin.

d'Amico, E.A.Ud Din Ahmad, M.Cmentowski, V.Girbig, M.Muller, F.Wohlgemuth, S.Brockmeyer, A.Maffini, S.Janning, P.Vetter, I.R.Carter, A.P.Perrakis, A.Musacchio, A.

(2022) J Cell Biol 221

  • DOI: https://doi.org/10.1083/jcb.202206131
  • Primary Citation of Related Structures:  
    8ARF

  • PubMed Abstract: 

    Cytoplasmic Dynein 1, or Dynein, is a microtubule minus end-directed motor. Dynein motility requires Dynactin and a family of activating adaptors that stabilize the Dynein-Dynactin complex and promote regulated interactions with cargo in space and time. How activating adaptors limit Dynein activation to specialized subcellular locales is unclear. Here, we reveal that Spindly, a mitotic Dynein adaptor at the kinetochore corona, exists natively in a closed conformation that occludes binding of Dynein-Dynactin to its CC1 box and Spindly motif. A structure-based analysis identified various mutations promoting an open conformation of Spindly that binds Dynein-Dynactin. A region of Spindly downstream from the Spindly motif and not required for cargo binding faces the CC1 box and stabilizes the intramolecular closed conformation. This region is also required for robust kinetochore localization of Spindly, suggesting that kinetochores promote Spindly activation to recruit Dynein. Thus, our work illustrates how specific Dynein activation at a defined cellular locale may require multiple factors.


  • Organizational Affiliation

    Department of Mechanistic Cell Biology, Max Planck Institute of Molecular Physiology, Dortmund, Germany.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Protein SpindlyA [auth B],
B [auth A]
102Homo sapiensMutation(s): 0 
Gene Names: SPDL1CCDC99
UniProt & NIH Common Fund Data Resources
Find proteins for Q96EA4 (Homo sapiens)
Explore Q96EA4 
Go to UniProtKB:  Q96EA4
PHAROS:  Q96EA4
GTEx:  ENSG00000040275 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ96EA4
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 0.290 
  • R-Value Work: 0.249 
  • Space Group: P 32 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 112.507α = 90
b = 112.507β = 90
c = 49.642γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
CRANK2phasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2022-09-07
    Type: Initial release
  • Version 1.1: 2022-09-28
    Changes: Database references