SYNJ2BP PDZ domain in complex with a synthetic Vangl2 peptide.
Carrasco, K., Cousido Siah, A., Gogl, G., Betzi, S., McEwen, A., Kostmann, C., Trave, G.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Synaptojanin-2-binding protein,Annexin A2 | 417 | Homo sapiens | Mutation(s): 0  Gene Names: SYNJ2BP, OMP25, ANXA2, ANX2, ANX2L4, CAL1H, LPC2D | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P57105 (Homo sapiens) Explore P57105  Go to UniProtKB:  P57105 | |||||
PHAROS:  P57105 GTEx:  ENSG00000213463  | |||||
Find proteins for P07355 (Homo sapiens) Explore P07355  Go to UniProtKB:  P07355 | |||||
PHAROS:  P07355 GTEx:  ENSG00000182718  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Groups | P07355P57105 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
GLY-GLY-GLY-THR-SER-VAL | 6 | Homo sapiens | Mutation(s): 0  | ||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
GOL Query on GOL | G [auth A], H [auth A], I [auth A], J [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
CA Query on CA | C [auth A], D [auth A], E [auth A], F [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 59.67 | α = 90 |
b = 75.06 | β = 90 |
c = 108.92 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
XSCALE | data scaling |
PDB_EXTRACT | data extraction |
Funding Organization | Location | Grant Number |
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Not funded | -- |