8A8S | pdb_00008a8s

30S ribosomal protein S24e from Thermococcus kodakarensis

• PDB DOI: https://doi.org/10.2210/pdb8A8S/pdb

• Classification: GENE REGULATION
• Organism(s): Thermococcus kodakarensis
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2022-06-23 Released: 2023-07-05 
• Deposition Author(s): Calio, A., Hoh, F.
• Funding Organization(s): Agence Nationale de la Recherche (ANR), Centre National de la Recherche Scientifique (CNRS)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.66 Å
• R-Value Free: 
  0.260 (Depositor), 0.270 (DCC) 
• R-Value Work: 
  0.220 (Depositor), 0.230 (DCC) 

Starting Model: experimental

Literature

30S ribosomal protein S24e from Thermococcus kodakarensis

Calio, A., Hoh, F.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 11.2 kDa 
• Atom Count: 867 
• Modeled Residue Count: 96 
• Deposited Residue Count: 96 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S24e	A	96	Thermococcus kodakarensis	Mutation(s): 0  Gene Names: rps24e, TK1696
UniProt
Find proteins for Q5JIY8 (Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)) Explore Q5JIY8  Go to UniProtKB:  Q5JIY8

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.66 Å
• R-Value Free:  0.260 (Depositor), 0.270 (DCC) 
• R-Value Work:  0.220 (Depositor), 0.230 (DCC) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 23.551	α = 90
b = 55.272	β = 98.98
c = 37.579	γ = 90

Software Package:

Software Name	Purpose
XDS	data reduction
Aimless	data scaling
PHASER	phasing
PHENIX	refinement
PDB_EXTRACT	data extraction

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-07-05 
Deposition Author(s): Calio, A., Hoh, F.

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Funding Organization	Location	Grant Number
Agence Nationale de la Recherche (ANR)	France	17-CE11-0012-01
Centre National de la Recherche Scientifique (CNRS)	France	MITI OriginsUnderPressure et LifeAdapt

Revision History  

• Version 1.0: 2023-07-05
  Type: Initial release
  
• Version 1.1: 2024-02-07
  Changes: Data collection, Refinement description