8A85

Structure of the Reconstructed Ancestor of Phenolic Acid Decarboxylase AncPAD134

PDB DOI: https://doi.org/10.2210/pdb8A85/pdb

Classification: LYASE
Organism(s): synthetic construct
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-06-22 Released: 2023-07-05
Deposition Author(s): Mokos, D., Schruefer, A., Gruber, K., Daniel, B.
Funding Organization(s): H2020 Marie Curie Actions of the European Commission

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.67 Å
R-Value Free: 0.229
R-Value Work: 0.191

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Reconstructed ancestral sequences of bacterial phenolic acid decarboxylase show increased thermostability

Myrtollari, K., Kracher, D., Calderini, E., Schruefer, A., Mokos, D., Daniel, B., Wirnsberger, G., Gruber, K., Kourist, R.

To be published.

Macromolecule Content

Total Structure Weight: 128.84 kDa
Atom Count: 8,286
Modelled Residue Count: 998
Deposited Residue Count: 1,140
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Phenolic acid decarboxylase N134	A, B, C, D, E A, B, C, D, E, F	190	synthetic construct	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.67 Å
R-Value Free: 0.229
R-Value Work: 0.191
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 97.321	α = 90
b = 106.679	β = 90
c = 114.752	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
Aimless	data scaling
PROTEUM	data reduction
PROTEUM	data scaling
MOLREP	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2023-07-05

Deposition Author(s):

Funding Organization	Location	Grant Number
H2020 Marie Curie Actions of the European Commission	European Union	860414

Revision History (Full details and data files)

Version 1.0: 2023-07-05
Type: Initial release
Version 1.1: 2024-02-07
Changes: Data collection, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.