8A5U

Crystal structure of the beta3 subunit extracellular domain of nicotinic acetylcholine receptor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.282 
  • R-Value Work: 0.211 
  • R-Value Observed: 0.214 

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This is version 1.1 of the entry. See complete history


Literature

Structural Insights into the Role of beta 3 nAChR Subunit in the Activation of Nicotinic Receptors.

Giastas, P.Papakyriakou, A.Tsafaras, G.Tzartos, S.J.Zouridakis, M.

(2022) Molecules 27

  • DOI: https://doi.org/10.3390/molecules27144642
  • Primary Citation of Related Structures:  
    8A5U

  • PubMed Abstract: 

    The β3 subunit of nicotinic acetylcholine receptors (nAChRs) participates in heteropentameric assemblies with some α and other β neuronal subunits forming a plethora of various subtypes, differing in their electrophysiological and pharmacological properties. While β3 has for several years been considered an accessory subunit without direct participation in the formation of functional binding sites, recent electrophysiology data have disputed this notion and indicated the presence of a functional (+) side on the extracellular domain (ECD) of β3. In this study, we present the 2.4 Å resolution crystal structure of the monomeric β3 ECD, which revealed rather distinctive loop C features as compared to those of α nAChR subunits, leading to intramolecular stereochemical hindrance of the binding site cavity. Vigorous molecular dynamics simulations in the context of full length pentameric β3-containing nAChRs, while not excluding the possibility of a β3 (+) binding site, demonstrate that this site cannot efficiently accommodate the agonist nicotine. From the structural perspective, our results endorse the accessory rather than functional role of the β3 nAChR subunit, in accordance with earlier functional studies on β3-containing nAChRs.


  • Organizational Affiliation

    Department of Neurobiology, Hellenic Pasteur Institute, GR11521 Athens, Greece.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Neuronal acetylcholine receptor subunit beta-3A [auth B]221Homo sapiensMutation(s): 1 
Gene Names: CHRNB3
UniProt & NIH Common Fund Data Resources
Find proteins for Q05901 (Homo sapiens)
Explore Q05901 
Go to UniProtKB:  Q05901
PHAROS:  Q05901
GTEx:  ENSG00000147432 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ05901
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.282 
  • R-Value Work: 0.211 
  • R-Value Observed: 0.214 
  • Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 50.998α = 90
b = 66.772β = 90
c = 73.591γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
XDSdata scaling
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Hellenic Foundation for Research and Innovation (HFRI)Greece677

Revision History  (Full details and data files)

  • Version 1.0: 2022-08-10
    Type: Initial release
  • Version 1.1: 2024-01-31
    Changes: Data collection, Refinement description