8A51 | pdb_00008a51

Crystal structure of HSF2BP-BRME1 complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 
    0.243 (Depositor), 0.234 (DCC) 
  • R-Value Work: 
    0.235 (Depositor), 0.228 (DCC) 
  • R-Value Observed: 
    0.235 (Depositor) 

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

Validation slider image for 8A51

This is version 1.2 of the entry. See complete history

Literature

BRCA2-HSF2BP oligomeric ring disassembly by BRME1 promotes homologous recombination.

Ghouil, R.Miron, S.Sato, K.Ristic, D.van Rossum-Fikkert, S.E.Legrand, P.Ouldali, M.Winter, J.M.Ropars, V.David, G.Arteni, A.A.Wyman, C.Knipscheer, P.Kanaar, R.Zelensky, A.N.Zinn-Justin, S.

(2023) Sci Adv 9: eadi7352-eadi7352

  • DOI: https://doi.org/10.1126/sciadv.adi7352
  • Primary Citation Related Structures: 
    8A50, 8A51

  • PubMed Abstract: 

    In meiotic homologous recombination (HR), BRCA2 facilitates loading of the recombinases RAD51 and DMC1 at the sites of double-strand breaks (DSBs). The HSF2BP-BRME1 complex interacts with BRCA2. Its absence causes a severe reduction in recombinase loading at meiotic DSB. We previously showed that, in somatic cancer cells ectopically producing HSF2BP, DNA damage can trigger HSF2BP-dependent degradation of BRCA2, which prevents HR. Here, we report that, upon binding to BRCA2, HSF2BP forms octameric rings that are able to interlock into a large ring-shaped 24-mer. Addition of BRME1 leads to dissociation of both of these ring structures and cancels the disruptive effect of HSF2BP on cancer cell resistance to DNA damage. It also prevents BRCA2 degradation during interstrand DNA crosslink repair in Xenopus egg extracts. We propose that, during meiosis, the control of HSF2BPBRCA2 oligomerization by BRME1 ensures timely assembly of the ring complex that concentrates BRCA2 and controls its turnover, thus promoting HR.


  • Organizational Affiliation
    • Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), 91198 Gif-sur-Yvette, France.

Macromolecule Content 

  • Total Structure Weight: 9.18 kDa 
  • Atom Count: 675 
  • Modeled Residue Count: 69 
  • Deposited Residue Count: 72 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Heat shock factor 2-binding protein32synthetic constructMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for O75031 (Homo sapiens)
Explore O75031 
Go to UniProtKB:  O75031
PHAROS:  O75031
GTEx:  ENSG00000160207 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO75031
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Break repair meiotic recombinase recruitment factor 140synthetic constructMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q0VDD7 (Homo sapiens)
Explore Q0VDD7 
Go to UniProtKB:  Q0VDD7
PHAROS:  Q0VDD7
GTEx:  ENSG00000132016 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ0VDD7
Sequence Annotations
Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
PEG

Query on PEG



Download:Ideal Coordinates CCD File
C [auth A],
D [auth A],
F [auth B]
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
EDO

Query on EDO



Download:Ideal Coordinates CCD File
E [auth A],
G [auth B],
H [auth B],
I [auth B]
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
CL

Query on CL



Download:Ideal Coordinates CCD File
J [auth B]CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free:  0.243 (Depositor), 0.234 (DCC) 
  • R-Value Work:  0.235 (Depositor), 0.228 (DCC) 
  • R-Value Observed: 0.235 (Depositor) 
Space Group: I 41 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 73.866α = 90
b = 73.866β = 90
c = 92.801γ = 90
Software Package:
Software NamePurpose
BUSTERrefinement
XDSdata reduction
STARANISOdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
French Alternative Energies and Atomic Energy Commission (CEA)France--

Revision History  (Full details and data files)

  • Version 1.0: 2023-07-05
    Type: Initial release
  • Version 1.1: 2024-01-17
    Changes: Data collection, Database references
  • Version 1.2: 2024-05-01
    Changes: Refinement description