Substrate Activation at the Ni,Fe Cluster of CO Dehydrogenases: The Influence of the Protein Matrix
Basak, Y., Jeoung, J.H., Domnik, L., Ruickoldt, J., Dobbek, H.(2022) ACS Catal 
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
(2022) ACS Catal 
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Carbon monoxide dehydrogenase 2 | A [auth X] | 636 | Carboxydothermus hydrogenoformans Z-2901 | Mutation(s): 1  Gene Names: cooS2, cooSII, CHY_0085 EC: 1.2.7.4 | |
UniProt | |||||
Find proteins for Q9F8A8 (Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901)) Explore Q9F8A8  Go to UniProtKB:  Q9F8A8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9F8A8 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SF4 Query on SF4 | B [auth X], D [auth X] | IRON/SULFUR CLUSTER Fe4 S4 LJBDFODJNLIPKO-UHFFFAOYSA-N | |||
FES Query on FES | C [auth X] | FE2/S2 (INORGANIC) CLUSTER Fe2 S2 NIXDOXVAJZFRNF-UHFFFAOYSA-N | |||
PEG Query on PEG | F [auth X] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N | |||
SO4 Query on SO4 | E [auth X] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 111.84 | α = 90 |
b = 75.47 | β = 111.54 |
c = 71.34 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
PDB_EXTRACT | data extraction |
XDS | data reduction |
XSCALE | data scaling |
PHENIX | phasing |
MxCuBE | data collection |
Funding Organization | Location | Grant Number |
---|---|---|
German Research Foundation (DFG) | Germany | DFG DO 785/6-2 |