7ZO9 | pdb_00007zo9

cryo-EM structure of CGT ABC transporter in vanadate trapped state


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 7ZO9

This is version 1.2 of the entry. See complete history

Literature

Mechanism of cyclic beta-glucan export by ABC transporter Cgt of Brucella.

Sedzicki, J.Ni, D.Lehmann, F.Wu, N.Zenobi, R.Jung, S.Stahlberg, H.Dehio, C.

(2022) Nat Struct Mol Biol 29: 1170-1177

  • DOI: https://doi.org/10.1038/s41594-022-00868-7
  • Primary Citation Related Structures: 
    7ZNU, 7ZO8, 7ZO9, 7ZOA

  • PubMed Abstract: 

    Polysaccharides play critical roles in bacteria, including the formation of protective capsules and biofilms and establishing specific host cell interactions. Their transport across membranes is often mediated by ATP-binding cassette (ABC) transporters, which utilize ATP to translocate diverse molecules. Cyclic β-glucans (CβGs) are critical for host interaction of the Rhizobiales, including the zoonotic pathogen Brucella. CβGs are exported into the periplasmic space by the cyclic glucan transporter (Cgt). The interaction of an ABC transporter with a polysaccharide substrate has not been visualized so far. Here we use single-particle cryoelectron microscopy to elucidate the structures of Cgt from Brucella abortus in four conformational states. The substrate-bound structure reveals an unusual binding pocket at the height of the cytoplasmic leaflet, whereas ADP-vanadate models hint at an alternative mechanism of substrate release. Our work provides insights into the translocation of large, heterogeneous substrates and sheds light on protein-polysaccharide interactions in general.


  • Organizational Affiliation
    • Biozentrum, University of Basel, Basel, Switzerland.

Macromolecule Content 

  • Total Structure Weight: 133.14 kDa 
  • Atom Count: 8,730 
  • Modeled Residue Count: 1,112 
  • Deposited Residue Count: 1,198 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Beta-(1-->2)glucan export ATP-binding/permease protein NdvA
A, B
599Brucella abortus 2308Mutation(s): 0 
Gene Names: ndvAcgtBAB1_1017
EC: 7.5.2.3
Membrane Entity: Yes 
UniProt
Find proteins for Q2YQ73 (Brucella abortus (strain 2308))
Explore Q2YQ73 
Go to UniProtKB:  Q2YQ73
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ2YQ73
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swiss National Science FoundationSwitzerland310030B_201273
Swiss National Science FoundationSwitzerland180541
Swiss National Science FoundationSwitzerland185544

Revision History  (Full details and data files)

  • Version 1.0: 2022-12-07
    Type: Initial release
  • Version 1.1: 2023-03-01
    Changes: Database references
  • Version 1.2: 2024-07-24
    Changes: Data collection