7ZKD | pdb_00007zkd

The NMR structure of the MAX47 effector from Magnaporthe Oryzae


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 20 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

The structural landscape and diversity of Pyricularia oryzae MAX effectors revisited.

Lahfa, M.Barthe, P.de Guillen, K.Cesari, S.Raji, M.Kroj, T.Le Naour-Vernet, M.Hoh, F.Gladieux, P.Roumestand, C.Gracy, J.Declerck, N.Padilla, A.

(2024) PLoS Pathog 20: e1012176-e1012176

  • DOI: https://doi.org/10.1371/journal.ppat.1012176
  • Primary Citation of Related Structures:  
    7ZJY, 7ZK0, 7ZKD, 8C8A

  • PubMed Abstract: 

    Magnaporthe AVRs and ToxB-like (MAX) effectors constitute a family of secreted virulence proteins in the fungus Pyricularia oryzae (syn. Magnaporthe oryzae), which causes blast disease on numerous cereals and grasses. In spite of high sequence divergence, MAX effectors share a common fold characterized by a ß-sandwich core stabilized by a conserved disulfide bond. In this study, we investigated the structural landscape and diversity within the MAX effector repertoire of P. oryzae. Combining experimental protein structure determination and in silico structure modeling we validated the presence of the conserved MAX effector core domain in 77 out of 94 groups of orthologs (OG) identified in a previous population genomic study. Four novel MAX effector structures determined by NMR were in remarkably good agreement with AlphaFold2 (AF2) predictions. Based on the comparison of the AF2-generated 3D models we propose a classification of the MAX effectors superfamily in 20 structural groups that vary in the canonical MAX fold, disulfide bond patterns, and additional secondary structures in N- and C-terminal extensions. About one-third of the MAX family members remain singletons, without strong structural relationship to other MAX effectors. Analysis of the surface properties of the AF2 MAX models also highlights the high variability within the MAX family at the structural level, potentially reflecting the wide diversity of their virulence functions and host targets.


  • Organizational Affiliation
    • Centre de Biologie Structurale, Univ Montpellier, CNRS UMR 5048, INSERM U 1054, Montpellier, France.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
MAX effector protein95Pyricularia oryzaeMutation(s): 0 
Gene Names: OOW_P131scaffold01587g2
UniProt
Find proteins for L7ISI9 (Pyricularia oryzae (strain P131))
Explore L7ISI9 
Go to UniProtKB:  L7ISI9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupL7ISI9
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 20 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Agence Nationale de la Recherche (ANR)FranceANR-18-CE20-0016-02
French Infrastructure for Integrated Structural Biology (FRISBI)FranceANR-10-INSB-05

Revision History  (Full details and data files)

  • Version 1.0: 2023-04-26
    Type: Initial release
  • Version 1.1: 2023-11-08
    Changes: Data collection, Database references
  • Version 1.2: 2024-09-04
    Changes: Database references
  • Version 1.3: 2024-11-06
    Changes: Structure summary