7Z8J

Cytoplasmic dynein (A2) bound to BICDR1


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.93 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structure of dynein-dynactin on microtubules shows tandem adaptor binding.

Chaaban, S.Carter, A.P.

(2022) Nature 610: 212-216

  • DOI: https://doi.org/10.1038/s41586-022-05186-y
  • Primary Citation of Related Structures:  
    7Z8F, 7Z8G, 7Z8H, 7Z8I, 7Z8J, 7Z8K, 7Z8L, 7Z8M

  • PubMed Abstract: 

    Cytoplasmic dynein is a microtubule motor that is activated by its cofactor dynactin and a coiled-coil cargo adaptor 1-3 . Up to two dynein dimers can be recruited per dynactin, and interactions between them affect their combined motile behaviour 4-6 . Different coiled-coil adaptors are linked to different cargos 7,8 , and some share motifs known to contact sites on dynein and dynactin 4,9-13 . There is limited structural information on how the resulting complex interacts with microtubules and how adaptors are recruited. Here we develop a cryo-electron microscopy processing pipeline to solve the high-resolution structure of dynein-dynactin and the adaptor BICDR1 bound to microtubules. This reveals the asymmetric interactions between neighbouring dynein motor domains and how they relate to motile behaviour. We found that two adaptors occupy the complex. Both adaptors make similar interactions with the dyneins but diverge in their contacts with each other and dynactin. Our structure has implications for the stability and stoichiometry of motor recruitment by cargos.


  • Organizational Affiliation

    Division of Structural Studies, Medical Research Council Laboratory of Molecular Biology, Cambridge, UK.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
BICD family-like cargo adapter 1A [auth X],
I [auth x]
577Mus musculusMutation(s): 0 
Gene Names: Bicdl1Bicdr1Ccdc64
UniProt & NIH Common Fund Data Resources
Find proteins for A0JNT9 (Mus musculus)
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Go to UniProtKB:  A0JNT9
IMPC:  MGI:1922915
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UniProt GroupA0JNT9
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Cytoplasmic dynein 1 heavy chain 1B [auth f],
E [auth m],
F [auth n]
4,646Homo sapiensMutation(s): 0 
Gene Names: DYNC1H1DHC1DNCH1DNCLDNECLDYHCKIAA0325
UniProt & NIH Common Fund Data Resources
Find proteins for Q14204 (Homo sapiens)
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PHAROS:  Q14204
GTEx:  ENSG00000197102 
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UniProt GroupQ14204
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Cytoplasmic dynein 1 intermediate chain 2C [auth h],
G [auth o]
638Homo sapiensMutation(s): 0 
Gene Names: DYNC1I2DNCI2DNCIC2
UniProt & NIH Common Fund Data Resources
Find proteins for Q13409 (Homo sapiens)
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PHAROS:  Q13409
GTEx:  ENSG00000077380 
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UniProt GroupQ13409
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Cytoplasmic dynein 1 light intermediate chain 2D [auth j],
H [auth r]
492Homo sapiensMutation(s): 0 
Gene Names: DYNC1LI2DNCLI2LIC2
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Find proteins for O43237 (Homo sapiens)
Explore O43237 
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PHAROS:  O43237
GTEx:  ENSG00000135720 
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UniProt GroupO43237
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.93 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
RECONSTRUCTIONRELION

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom210711/Z/18/Z
Medical Research Council (MRC, United Kingdom)United KingdomMC_UP_A025_1011
European Molecular Biology Organization (EMBO)European UnionALTF 334-2020

Revision History  (Full details and data files)

  • Version 1.0: 2022-07-27
    Type: Initial release
  • Version 1.1: 2022-09-21
    Changes: Database references
  • Version 1.2: 2022-10-19
    Changes: Database references