7YDJ

Cryo EM structure of CD97/miniG12 complex

• PDB DOI: https://doi.org/10.2210/pdb7YDJ/pdb
• EM Map EMD-33749: EMDB EMDataResource

• Classification: MEMBRANE PROTEIN
• Organism(s): Homo sapiens
• Expression System: Spodoptera frugiperda
• Mutation(s): No 
• Membrane Protein: Yes  PDBTMMemProtMD


• Deposited: 2022-07-04 Released: 2023-07-12 
• Deposition Author(s): He, Y., Wang, N.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.03 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Cryo EM structure of CD97/miniG12 complex

He, Y., Wang, N.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 5-mer - A1B1C1D1E1 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 146.57 kDa 
• Atom Count: 8,751 
• Modelled Residue Count: 1,111 
• Deposited Residue Count: 1,315 
• Unique protein chains: 5

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
engineered mini-G12	A	345	Homo sapiens	Mutation(s): 0  Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for P63096 (Homo sapiens) Explore P63096  Go to UniProtKB:  P63096
PHAROS:  P63096 GTEx:  ENSG00000127955
Find proteins for Q03113 (Homo sapiens) Explore Q03113  Go to UniProtKB:  Q03113
PHAROS:  Q03113 GTEx:  ENSG00000146535
UniProt Groups	P63096Q03113

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1	B	345	Homo sapiens	Mutation(s): 0  Gene Names: GNB1
UniProt & NIH Common Fund Data Resources
Find proteins for P62873 (Homo sapiens) Explore P62873  Go to UniProtKB:  P62873
PHAROS:  P62873 GTEx:  ENSG00000078369

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
scFv16	C [auth E]	247	Homo sapiens	Mutation(s): 0

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2	D [auth G]	71	Homo sapiens	Mutation(s): 0  Gene Names: GNG2 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for P59768 (Homo sapiens) Explore P59768  Go to UniProtKB:  P59768
PHAROS:  P59768 GTEx:  ENSG00000186469

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
Adhesion G protein-coupled receptor E5 subunit beta	E [auth R]	307	Homo sapiens	Mutation(s): 0  Gene Names: CD97 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for P48960 (Homo sapiens) Explore P48960  Go to UniProtKB:  P48960
PHAROS:  P48960 GTEx:  ENSG00000123146

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.03 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-07-12 
Deposition Author(s): He, Y., Wang, N.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	32070048

Revision History  

• Version 1.0: 2023-07-12
  Type: Initial release