7Y1C | pdb_00007y1c

CryoEM structure of Klebsiella phage Kp9 tail complex applied with C6 symmetry

  • Classification: VIRUS
  • Organism(s): Klebsiella phage Kp9
  • Mutation(s): No 

  • Deposited: 2022-06-08 Released: 2023-06-14 
  • Deposition Author(s): Huang, L., Xiang, Y.
  • Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.13 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 7Y1C

This is version 1.1 of the entry. See complete history. 

Literature

Structure and assembly of the Klebsiella pneumoniae phage tail fibers

Huang, L., Xiang, Y.

To be published.

Macromolecule Content 

  • Total Structure Weight: 501.52 kDa 
  • Atom Count: 20,697 
  • Modeled Residue Count: 2,650 
  • Deposited Residue Count: 4,576 
  • Unique protein chains: 4

Macromolecules

Find similar proteins by:
|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
phage connector proteinA,
B [auth L]		535Klebsiella phage Kp9Mutation(s): 0 
UniProt
Find proteins for A0AA82WNZ4 (Klebsiella phage Kp9)
Explore A0AA82WNZ4 
Go to UniProtKB:  A0AA82WNZ4
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0AA82WNZ4
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
phage tail tubular protein AC [auth W],
D [auth X]		192Klebsiella phage Kp9Mutation(s): 0 
UniProt
Find proteins for A0AA82WNZ5 (Klebsiella phage Kp9)
Explore A0AA82WNZ5 
Go to UniProtKB:  A0AA82WNZ5
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0AA82WNZ5
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
phage tail tubular protein BE [auth Y]791Klebsiella phage Kp9Mutation(s): 0 
UniProt
Find proteins for A0AA82WNZ6 (Klebsiella phage Kp9)
Explore A0AA82WNZ6 
Go to UniProtKB:  A0AA82WNZ6
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0AA82WNZ6
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
phage type I tail fiberF [auth e],
G [auth f],
H [auth g]		777Klebsiella phage Kp9Mutation(s): 0 
UniProt
Find proteins for A0AA82WNZ1 (Klebsiella phage Kp9)
Explore A0AA82WNZ1 
Go to UniProtKB:  A0AA82WNZ1
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0AA82WNZ1
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.13 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.0.8

Structure Validation

View Full Validation Report



View more in-depth experimental data

Entry History 

& Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China--

Revision History  (Full details and data files)

  • Version 1.0: 2023-06-14
    Type: Initial release
  • Version 1.1: 2024-07-03
    Changes: Data collection