7XY9

Cryo-EM structure of secondary alcohol dehydrogenases TbSADH after carrier-free immobilization based on weak intermolecular interactions

PDB DOI: https://doi.org/10.2210/pdb7XY9/pdb
EM Map EMD-33514: EMDB EMDataResource

Classification: OXIDOREDUCTASE
Organism(s): Thermoanaerobacter brockii
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2022-06-01 Released: 2023-06-07
Deposition Author(s): Chen, Q., Li, X., Yang, F., Qu, G., Sun, Z.T., Wang, Y.J.
Funding Organization(s): Ministry of Science and Technology (MoST, China), National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.12 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Active and stable alcohol dehydrogenase-assembled hydrogels via synergistic bridging of triazoles and metal ions

Chen, Q., Qu, G., Li, X., Feng, M., Yang, F., Li, Y., Li, J., Tong, F., Song, S., Wang, Y., Sun, Z., Luo, G.

(2023) Nat Commun 14: 2117

DOI: https://doi.org/10.1038/s41467-023-37921-y

Macromolecule Content

Total Structure Weight: 154.55 kDa
Atom Count: 10,962
Modelled Residue Count: 1,376
Deposited Residue Count: 1,432
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
NADP-dependent isopropanol dehydrogenase	A, B, C, D	358	Thermoanaerobacter brockii	Mutation(s): 1 Gene Names: adh EC: 1.1.1.80
UniProt
Find proteins for P14941 (Thermoanaerobacter brockii) Explore P14941 Go to UniProtKB: P14941
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P14941
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN Query on ZN Download Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain J [auth B] SDF format, chain M [auth C] SDF format, chain P [auth D] MOL2 format, chain E [auth A] MOL2 format, chain J [auth B] MOL2 format, chain M [auth C] MOL2 format, chain P [auth D]	E [auth A], J [auth B], M [auth C], P [auth D]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain E [auth A] Focus chain J [auth B] Focus chain M [auth C] Focus chain P [auth D] Interactions & Density Focus chain E [auth A] Focus chain J [auth B] Focus chain M [auth C] Focus chain P [auth D]
MG Query on MG Download Ideal Coordinates CCD File SDF format, chain F [auth A] SDF format, chain G [auth A] SDF format, chain H [auth B] SDF format, chain I [auth B] SDF format, chain K [auth C] SDF format, chain L [auth C] SDF format, chain N [auth D] SDF format, chain O [auth D] MOL2 format, chain F [auth A] MOL2 format, chain G [auth A] MOL2 format, chain H [auth B] MOL2 format, chain I [auth B] MOL2 format, chain K [auth C] MOL2 format, chain L [auth C] MOL2 format, chain N [auth D] MOL2 format, chain O [auth D]	F [auth A] G [auth A] H [auth B] I [auth B] K [auth C] F [auth A], G [auth A], H [auth B], I [auth B], K [auth C], L [auth C], N [auth D], O [auth D]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain F [auth A] Focus chain G [auth A] Focus chain H [auth B] Focus chain I [auth B] Focus chain K [auth C] Focus chain L [auth C] Focus chain N [auth D] Focus chain O [auth D] Interactions & Density Focus chain F [auth A] Focus chain G [auth A] Focus chain H [auth B] Focus chain I [auth B] Focus chain K [auth C] Focus chain L [auth C] Focus chain N [auth D] Focus chain O [auth D]